PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G09G027816 View in Genome Browser
Position	chrG09:10013793-10019101 (+) 5308bp
Gene Type	gene
Gene Description (Protein Product)	Large subunit GTPase
Organism	Populus alba x Populus glandulosa
Also AS	Potri.009G017000AT1G08410Potri.009G017000.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_UnG085676 WD repeat-containing protein Pop_G17G033327 Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit Pop_UnG084952 Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits
Regulatory gene	Pop_A01G003802 AP2-like ethylene-responsive transcription factor Pop_A01G029538 AP2-like ethylene-responsive transcription factor Pop_A01G056931 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000054	ribosomal subunit export from nucleus	BP
GO:0000166	nucleotide binding	MF
GO:0001882	nucleoside binding	MF
GO:0001883	purine nucleoside binding	MF
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003924	GTPase activity	MF
GO:0005488	binding	MF
GO:0005525	GTP binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005730	nucleolus	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006364	rRNA processing	BP
GO:0006396	RNA processing	BP
GO:0006403	RNA localization	BP
GO:0006405	RNA export from nucleus	BP
GO:0006611	protein export from nucleus	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0007275	multicellular organism development	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009790	embryo development	BP
GO:0009791	post-embryonic development	BP
GO:0009793	embryo development ending in seed dormancy	BP
GO:0009966	regulation of signal transduction	BP
GO:0009987	cellular process	BP
GO:0010154	fruit development	BP
GO:0010467	gene expression	BP
GO:0010646	regulation of cell communication	BP
GO:0010817	regulation of hormone levels	BP
GO:0012505	endomembrane system	CC
GO:0015030	Cajal body	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016070	RNA metabolic process	BP
GO:0016072	rRNA metabolic process	BP
GO:0016462	pyrophosphatase activity	MF
GO:0016604	nuclear body	CC
GO:0016787	hydrolase activity	MF
GO:0016817	hydrolase activity, acting on acid anhydrides	MF
GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	MF
GO:0017076	purine nucleotide binding	MF
GO:0017111	ribonucleoside triphosphate phosphatase activity	MF
GO:0019001	guanyl nucleotide binding	MF
GO:0022414	reproductive process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0023051	regulation of signaling	BP
GO:0031503	protein-containing complex localization	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032549	ribonucleoside binding	MF
GO:0032550	purine ribonucleoside binding	MF
GO:0032553	ribonucleotide binding	MF
GO:0032555	purine ribonucleotide binding	MF
GO:0032561	guanyl ribonucleotide binding	MF
GO:0032879	regulation of localization	BP
GO:0033036	macromolecule localization	BP
GO:0033750	ribosome localization	BP
GO:0034470	ncRNA processing	BP
GO:0034613	protein localization	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0035639	purine ribonucleoside triphosphate binding	MF
GO:0036094	small molecule binding	MF
GO:0042254	ribosome biogenesis	BP
GO:0042886	amide transport	BP
GO:0043021	ribonucleoprotein complex binding	MF
GO:0043022	ribosome binding	MF
GO:0043167	ion binding	MF
GO:0043168	anion binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044085	cellular component biogenesis	BP
GO:0044087	regulation of cellular component biogenesis	BP
GO:0044089	positive regulation of cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0044877	protein-containing complex binding	MF
GO:0045184	establishment of protein localization	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046626	regulation of insulin receptor signaling pathway	BP
GO:0046907	intracellular transport	BP
GO:0048316	seed development	BP
GO:0048366	leaf development	BP
GO:0048367	shoot system development	BP
GO:0048518	positive regulation of biological process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048608	reproductive structure development	BP
GO:0048731	system development	BP
GO:0048825	cotyledon development	BP
GO:0048827	phyllome development	BP
GO:0048856	anatomical structure development	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051049	regulation of transport	BP
GO:0051168	nuclear export	BP
GO:0051169	nuclear transport	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051656	establishment of organelle localization	BP
GO:0061458	reproductive system development	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0071166	ribonucleoprotein complex localization	BP
GO:0071426	obsolete ribonucleoprotein complex export from nucleus	BP
GO:0071428	obsolete rRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090069	regulation of ribosome biogenesis	BP
GO:0090070	positive regulation of ribosome biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097367	carbohydrate derivative binding	MF
GO:0099402	plant organ development	BP
GO:1900076	regulation of cellular response to insulin stimulus	BP
GO:1901265	nucleoside phosphate binding	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF
GO:2000012	regulation of auxin polar transport	BP

KEGG Term	Name	Description
map03008	Ribosome biogenesis in eukaryotes	Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.