Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G10G023095
View in Genome Browser
Position
chrG10:20420615-20424708 (-)
4093bp
Gene Type
gene
Gene Description (Protein Product)
Novel plant snare
Organism
Populus alba x Populus glandulosa
Also AS Potri.010G001900AT3G17440Potri.010G001900.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G16G016123 Belongs to the syntaxin family
Pop_G19G009488 Belongs to the syntaxin family
Pop_G17G067013 Vesicle transport V-snare
Regulatory gene
Pop_A01G004012 Myb/SANT-like DNA-binding domain
Pop_A01G004240 Trihelix transcription factor
Pop_A01G005990 MADS-box transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000149 SNARE binding MF
GO:0003674 molecular_function MF
GO:0005484 SNAP receptor activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005768 endosome CC
GO:0005770 late endosome CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005794 Golgi apparatus CC
GO:0005798 Golgi-associated vesicle CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006605 protein targeting BP
GO:0006623 protein targeting to vacuole BP
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006891 intra-Golgi vesicle-mediated transport BP
GO:0006892 post-Golgi vesicle-mediated transport BP
GO:0006896 Golgi to vacuole transport BP
GO:0006906 vesicle fusion BP
GO:0006996 organelle organization BP
GO:0007034 vacuolar transport BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009506 plasmodesma CC
GO:0009987 cellular process BP
GO:0010008 endosome membrane CC
GO:0012505 endomembrane system CC
GO:0012506 vesicle membrane CC
GO:0012507 ER to Golgi transport vesicle membrane CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0016197 endosomal transport BP
GO:0016482 cytosolic transport BP
GO:0030054 cell junction CC
GO:0030133 transport vesicle CC
GO:0030134 COPII-coated ER to Golgi transport vesicle CC
GO:0030135 coated vesicle CC
GO:0030658 transport vesicle membrane CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030660 Golgi-associated vesicle membrane CC
GO:0030662 coated vesicle membrane CC
GO:0031090 organelle membrane CC
GO:0031201 SNARE complex CC
GO:0031410 cytoplasmic vesicle CC
GO:0031902 late endosome membrane CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0033365 protein localization to organelle BP
GO:0034613 protein localization BP
GO:0042147 retrograde transport, endosome to Golgi BP
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044440 obsolete endosomal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048193 Golgi vesicle transport BP
GO:0048280 vesicle fusion with Golgi apparatus BP
GO:0048284 organelle fusion BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051641 cellular localization BP
GO:0051649 establishment of localization in cell BP
GO:0055044 symplast CC
GO:0061024 membrane organization BP
GO:0061025 membrane fusion BP
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0072594 establishment of protein localization to organelle BP
GO:0072665 protein localization to vacuole BP
GO:0072666 establishment of protein localization to vacuole BP
GO:0090174 organelle membrane fusion BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0098827 endoplasmic reticulum subcompartment CC