PPGR - Gene Detail

Basic Information

Gene ID	Pop_G10G064586 View in Genome Browser
Position	chrG10:16888782-16898120 (-) 9338bp
Gene Type	gene
Gene Description (Protein Product)	SAC3/GANP family
Organism	Populus alba x Populus glandulosa
Also AS	Potri.010G028200AT3G06290Potri.010G028200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G17G033186 Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates histones. The SAGA complex is recruited to specific gene promoters by activators, where it is required for transcription. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery

Pop_UnG052869 THO complex subunit

Pop_G19G021921 THO complex subunit

Regulatory gene

Pop_A01G003801 transcription factor

Pop_A01G003924 Zinc finger protein

Pop_A01G003996 GATA transcription factor

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0008150	biological_process	BP
GO:0010468	regulation of gene expression	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0034399	nuclear periphery	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044030	regulation of DNA methylation	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0048583	regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0060147	regulation of post-transcriptional gene silencing	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060966	regulation of gene silencing by RNA	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070920	regulation of production of small RNA involved in gene silencing by RNA	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090065	regulation of siRNA production	BP
GO:1900368	regulation of post-transcriptional gene silencing by RNA	BP