Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G11G077701
View in Genome Browser
Position
chrG11:5049144-5053575 (-)
4431bp
Gene Type
gene
Gene Description (Protein Product)
"protein At3g15000
Organism
Populus alba x Populus glandulosa
Also AS Potri.011G112200AT3G15000Potri.011G112200.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G14G050905 Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
Pop_G12G050660 Cyclin-dependent kinase
Pop_G13G071516 Zinc finger protein VAR3
Regulatory gene
Pop_A01G056931 Dof zinc finger protein
Pop_A01G059879 Dof zinc finger protein
Pop_A02G012400 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0000959 mitochondrial RNA metabolic process BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005739 mitochondrion CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009451 RNA modification BP
GO:0009507 chloroplast CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0016070 RNA metabolic process BP
GO:0016071 mRNA metabolic process BP
GO:0016553 base conversion or substitution editing BP
GO:0016554 cytidine to uridine editing BP
GO:0016556 mRNA modification BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046483 heterocycle metabolic process BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0050897 cobalt ion binding MF
GO:0071704 organic substance metabolic process BP
GO:0080156 mitochondrial mRNA modification BP
GO:0090304 nucleic acid metabolic process BP
GO:1900864 mitochondrial RNA modification BP
GO:1901360 organic cyclic compound metabolic process BP