Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G11G078934
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Position
chrG11:3195714-3196061 (-)
347bp
Gene Type
gene
Gene Description (Protein Product)
Calcium-binding protein PBP1-like
Organism
Populus alba x Populus glandulosa
Also AS Potri.011G129100AT4G27280Potri.011G129100.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G15G048786 two-component response regulator
Pop_G17G027393 Protein kinase PVPK-1-like
Pop_G16G035748 Calcium-binding protein CML42-like
Regulatory gene
Pop_A01G003802 AP2-like ethylene-responsive transcription factor
Pop_A01G005990 MADS-box transcription factor
Pop_A01G025061 B3 DNA binding domain

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005509 calcium ion binding MF
GO:0008150 biological_process BP
GO:0009628 response to abiotic stimulus BP
GO:0009719 response to endogenous stimulus BP
GO:0009725 response to hormone BP
GO:0009733 response to auxin BP
GO:0010033 response to organic substance BP
GO:0042221 response to chemical BP
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0046872 metal ion binding MF
GO:0050896 response to stimulus BP
GO:0080167 response to karrikin BP
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.