Basic Information
Gene ID
Pop_G12G007892
Position
chrG12:2097022-2098105 (+)
1083bp
Gene Type
gene
Gene Description (Protein Product)
ubiquitin-40S ribosomal protein
Organism
Also AS Potri.001G025300AT2G47110Potri.001G025300.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G16G060775 Belongs to the universal ribosomal protein uS12 family
Pop_G16G016176 Belongs to the universal ribosomal protein uS5 family
Pop_G13G070871 Belongs to the eukaryotic ribosomal protein eS21 family
Regulatory gene
Pop_A01G003796 isoform X1
Pop_A01G003804 Growth-regulating factor
Pop_A01G003952 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
KEGG Term Name Description
map04120 Ubiquitin mediated proteolysis Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.
map03010 Ribosome -