Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G12G050874
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Position
chrG12:10442091-10443026 (-)
935bp
Gene Type
gene
Gene Description (Protein Product)
"Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips
Organism
Populus alba x Populus glandulosa
Also AS Potri.012G032300AT5G15290Potri.012G032300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G16G060883 Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
Pop_G16G060882 Regulates membrane-cell wall junctions and localized cell wall deposition. Required for establishment of the Casparian strip membrane domain (CSD) and the subsequent formation of Casparian strips, a cell wall modification of the root endodermis that determines an apoplastic barrier between the intraorganismal apoplasm and the extraorganismal apoplasm and prevents lateral diffusion (By similarity)
Pop_G14G077970 Belongs to the yippee family
Regulatory gene
Pop_A01G004206 Myb family transcription factor
Pop_A01G005990 MADS-box transcription factor
Pop_A01G010387 Myb family transcription factor APL

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005623 obsolete cell CC
GO:0005886 plasma membrane CC
GO:0007043 cell-cell junction assembly BP
GO:0008150 biological_process BP
GO:0009505 plant-type cell wall CC
GO:0009531 secondary cell wall CC
GO:0009987 cellular process BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0022607 cellular component assembly BP
GO:0030312 external encapsulating structure CC
GO:0034329 cell junction assembly BP
GO:0034330 cell junction organization BP
GO:0042545 cell wall modification BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0044085 cellular component biogenesis BP
GO:0044426 obsolete cell wall part CC
GO:0044462 obsolete external encapsulating structure part CC
GO:0044464 obsolete cell part CC
GO:0045216 cell-cell junction organization BP
GO:0045229 external encapsulating structure organization BP
GO:0046983 protein dimerization activity MF
GO:0048037 obsolete cofactor binding MF
GO:0048226 Casparian strip CC
GO:0051536 iron-sulfur cluster binding MF
GO:0051540 metal cluster binding MF
GO:0071554 cell wall organization or biogenesis BP
GO:0071555 cell wall organization BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC