PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G12G073625 View in Genome Browser
Position	chrG12:11626577-11631079 (-) 4502bp
Gene Type	gene
Gene Description (Protein Product)	importin subunit beta-1-like
Organism	Populus alba x Populus glandulosa
Also AS	Potri.012G017500AT5G53480Potri.012G017500.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G14G044493 Nsp1-like C-terminal region Pop_G16G068628 HEAT-like repeat Pop_G15G017326 snRNA import into nucleus
Regulatory gene	Pop_A01G015459 Transcription factor TCP4-like Pop_A01G032201 transcription factor Pop_A01G056931 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000060	obsolete protein import into nucleus, translocation	BP
GO:0000070	mitotic sister chromatid segregation	BP
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000819	sister chromatid segregation	BP
GO:0003674	molecular_function	MF
GO:0005048	signal sequence binding	MF
GO:0005215	transporter activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005635	nuclear envelope	CC
GO:0005643	nuclear pore	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0006606	protein import into nucleus	BP
GO:0006607	NLS-bearing protein import into nucleus	BP
GO:0006610	ribosomal protein import into nucleus	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006928	obsolete movement of cell or subcellular component	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007018	microtubule-based movement	BP
GO:0007049	cell cycle	BP
GO:0007051	spindle organization	BP
GO:0007052	mitotic spindle organization	BP
GO:0007059	chromosome segregation	BP
GO:0007079	mitotic chromosome movement towards spindle pole	BP
GO:0007080	mitotic metaphase plate congression	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0007264	small GTPase mediated signal transduction	BP
GO:0007265	Ras protein signal transduction	BP
GO:0008092	cytoskeletal protein binding	MF
GO:0008104	protein localization	BP
GO:0008139	nuclear localization sequence binding	MF
GO:0008150	biological_process	BP
GO:0008565	obsolete protein transporter activity	MF
GO:0009507	chloroplast	CC
GO:0009536	plastid	CC
GO:0009987	cellular process	BP
GO:0010494	cytoplasmic stress granule	CC
GO:0012505	endomembrane system	CC
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0016020	membrane	CC
GO:0016043	cellular component organization	BP
GO:0017038	protein import	BP
GO:0019894	kinesin binding	MF
GO:0019899	enzyme binding	MF
GO:0019904	protein domain specific binding	MF
GO:0022402	cell cycle process	BP
GO:0022607	cellular component assembly	BP
GO:0023052	signaling	BP
GO:0030953	astral microtubule organization	BP
GO:0031072	heat shock protein binding	MF
GO:0031090	organelle membrane	CC
GO:0031122	cytoplasmic microtubule organization	BP
GO:0031291	Ran protein signal transduction	BP
GO:0031965	nuclear membrane	CC
GO:0031967	organelle envelope	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031975	envelope	CC
GO:0031981	nuclear lumen	CC
GO:0031984	organelle subcompartment	CC
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033218	amide binding	MF
GO:0033365	protein localization to organelle	BP
GO:0034399	nuclear periphery	CC
GO:0034504	protein localization to nucleus	BP
GO:0034613	protein localization	BP
GO:0035556	intracellular signal transduction	BP
GO:0035770	ribonucleoprotein granule	CC
GO:0036464	cytoplasmic ribonucleoprotein granule	CC
GO:0040001	establishment of mitotic spindle localization	BP
GO:0042277	peptide binding	MF
GO:0042886	amide transport	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0044085	cellular component biogenesis	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044432	obsolete endoplasmic reticulum part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044877	protein-containing complex binding	MF
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0048285	organelle fission	BP
GO:0050000	chromosome localization	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051169	nuclear transport	BP
GO:0051170	import into nucleus	BP
GO:0051179	localization	BP
GO:0051225	spindle assembly	BP
GO:0051234	establishment of localization	BP
GO:0051276	chromosome organization	BP
GO:0051293	establishment of spindle localization	BP
GO:0051303	establishment of chromosome localization	BP
GO:0051305	chromosome movement towards spindle pole	BP
GO:0051310	metaphase plate congression	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051653	spindle localization	BP
GO:0051656	establishment of organelle localization	BP
GO:0051716	cellular response to stimulus	BP
GO:0051879	Hsp90 protein binding	MF
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070727	cellular macromolecule localization	BP
GO:0070925	organelle assembly	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0071782	endoplasmic reticulum tubular network	CC
GO:0071840	cellular component organization or biogenesis	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0090307	mitotic spindle assembly	BP
GO:0097435	supramolecular fiber organization	BP
GO:0098813	nuclear chromosome segregation	BP
GO:0098827	endoplasmic reticulum subcompartment	CC
GO:0140014	mitotic nuclear division	BP
GO:1902850	microtubule cytoskeleton organization involved in mitosis	BP
GO:1903047	mitotic cell cycle process	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03013	RNA transport	RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.