Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G13G070935
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Position
chrG13:12194326-12205664 (+)
11338bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the cysteine synthase cystathionine beta- synthase family
Organism
Populus alba x Populus glandulosa
Also AS Potri.013G035500AT4G14880Potri.013G035500.v4.1

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_UnG034275 Serine acetyltransferase
Pop_G18G078411 Catalyzes the formation of 5-oxoproline from gamma- glutamyl dipeptides and plays a significant role in glutathione (GSH) homeostasis
Pop_G18G078503 Aspartate aminotransferase
Regulatory gene
Pop_A01G056931 Dof zinc finger protein
Pop_A01G059879 Dof zinc finger protein
Pop_A02G012400 Dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0000096 sulfur amino acid metabolic process BP
GO:0000097 sulfur amino acid biosynthetic process BP
GO:0000902 cell morphogenesis BP
GO:0000904 cell morphogenesis involved in differentiation BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004124 cysteine synthase activity MF
GO:0005488 binding MF
GO:0005575 cellular_component CC
GO:0005576 extracellular region CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005777 peroxisome CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006534 cysteine metabolic process BP
GO:0006535 cysteine biosynthetic process from serine BP
GO:0006563 L-serine metabolic process BP
GO:0006790 sulfur compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007568 aging BP
GO:0008144 obsolete drug binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008652 amino acid biosynthetic process BP
GO:0009058 biosynthetic process BP
GO:0009069 serine family amino acid metabolic process BP
GO:0009070 serine family amino acid biosynthetic process BP
GO:0009507 chloroplast CC
GO:0009532 plastid stroma CC
GO:0009536 plastid CC
GO:0009566 fertilization BP
GO:0009567 double fertilization forming a zygote and endosperm BP
GO:0009570 chloroplast stroma CC
GO:0009653 anatomical structure morphogenesis BP
GO:0009826 unidimensional cell growth BP
GO:0009856 pollination BP
GO:0009860 pollen tube growth BP
GO:0009932 cell tip growth BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0010038 response to metal ion BP
GO:0010043 response to zinc ion BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016049 cell growth BP
GO:0016053 organic acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups MF
GO:0019344 cysteine biosynthetic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019842 vitamin binding MF
GO:0019953 sexual reproduction BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0030170 pyridoxal phosphate binding MF
GO:0031090 organelle membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032989 cellular component morphogenesis BP
GO:0036094 small molecule binding MF
GO:0040007 growth BP
GO:0042221 response to chemical BP
GO:0042579 microbody CC
GO:0043167 ion binding MF
GO:0043168 anion binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044272 sulfur compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044434 obsolete chloroplast part CC
GO:0044435 obsolete plastid part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044706 multi-multicellular organism process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046686 response to cadmium ion BP
GO:0048037 obsolete cofactor binding MF
GO:0048046 apoplast CC
GO:0048468 cell development BP
GO:0048588 developmental cell growth BP
GO:0048589 developmental growth BP
GO:0048856 anatomical structure development BP
GO:0048868 pollen tube development BP
GO:0048869 cellular developmental process BP
GO:0050662 obsolete coenzyme binding MF
GO:0050896 response to stimulus BP
GO:0051704 obsolete multi-organism process BP
GO:0060560 developmental growth involved in morphogenesis BP
GO:0070279 vitamin B6 binding MF
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0097159 organic cyclic compound binding MF
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:1901363 heterocyclic compound binding MF
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901605 alpha-amino acid metabolic process BP
GO:1901607 alpha-amino acid biosynthetic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00920 Sulfur metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].