PPGR - Gene Detail

Basic Information

Gene ID	Pop_G14G000605 View in Genome Browser
Position	chrG14:7699604-7701355 (-) 1751bp
Gene Type	gene
Gene Description (Protein Product)	Signal recognition particle 14 kDa
Organism	Populus alba x Populus glandulosa
Also AS	Potri.013G125200AT2G43640Potri.013G125200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G16G068528 Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Pop_UnG090263 Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Pop_G16G060909 Signal recognition particle 54 kDa protein

Regulatory gene

Pop_A01G056931 Dof zinc finger protein

Pop_A01G059879 Dof zinc finger protein

Pop_A02G012400 Dof zinc finger protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	CC
GO:0006605	protein targeting	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0032991	protein-containing complex	CC
GO:0033036	macromolecule localization	BP
GO:0033365	protein localization to organelle	BP
GO:0034613	protein localization	BP
GO:0042886	amide transport	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0045047	protein targeting to ER	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0048500	signal recognition particle	CC
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0070727	cellular macromolecule localization	BP
GO:0070972	protein localization to endoplasmic reticulum	BP
GO:0071702	organic substance transport	BP
GO:0071705	nitrogen compound transport	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0072599	establishment of protein localization to endoplasmic reticulum	BP
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.