PPGR - Gene Detail

Basic Information

Gene ID	Pop_G16G016267 View in Genome Browser
Position	chrG16:8789796-8790339 (+) 543bp
Gene Type	gene
Gene Description (Protein Product)	"Catalyzes the conversion of 7
Organism	Populus alba x Populus glandulosa
Also AS	Potri.016G067200AT3G11750Potri.016G067200.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Pop_G18G078575 Branched-chain-amino-acid aminotransferase-like protein 3

Pop_G17G031545 Catalyzes the formation of 6,7-dimethyl-8- ribityllumazine by condensation of 5-amino-6-(D- ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin

Pop_G16G016325 Catalyzes conversion of folates to polyglutamate derivatives allowing concentration of folate compounds in the cell and the intracellular retention of these cofactors, which are important substrates for most of the folate-dependent enzymes that are involved in one-carbon transfer reactions involved in purine, pyrimidine and amino acid synthesis

Regulatory gene

Pop_A01G003954 Homeobox-leucine zipper protein

Pop_A01G004152 Homeobox-leucine zipper protein

Pop_A01G004498 Tesmin/TSO1-like CXC domain

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004150	dihydroneopterin aldolase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0016829	lyase activity	MF
GO:0016830	carbon-carbon lyase activity	MF
GO:0016832	aldehyde-lyase activity	MF
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC

KEGG Term	Name	Description
map01100	Metabolic pathways	-
map00790	Folate biosynthesis	-