Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G16G060816
View in Genome Browser
Position
chrG16:6532692-6540072 (-)
7380bp
Gene Type
gene
Gene Description (Protein Product)
Citrate synthase
Organism
Populus alba x Populus glandulosa
Also AS Potri.016G089300AT2G42790AT3G58750Potri.016G089300.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G17G021219 Malate dehydrogenase
Pop_G17G021223 Malate dehydrogenase
Pop_G19G007579 first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA
Regulatory gene
Pop_A01G003924 Zinc finger protein
Pop_A01G004096 transcriptional regulator
Pop_A01G004283 ZINC FINGER protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004108 citrate (Si)-synthase activity MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005777 peroxisome CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006629 lipid metabolic process BP
GO:0006631 fatty acid metabolic process BP
GO:0006635 fatty acid beta-oxidation BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009062 fatty acid catabolic process BP
GO:0009506 plasmodesma CC
GO:0009514 glyoxysome CC
GO:0009987 cellular process BP
GO:0016042 lipid catabolic process BP
GO:0016054 organic acid catabolic process BP
GO:0016740 transferase activity MF
GO:0016746 acyltransferase activity MF
GO:0019395 fatty acid oxidation BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030054 cell junction CC
GO:0030258 lipid modification BP
GO:0032787 monocarboxylic acid metabolic process BP
GO:0034440 lipid oxidation BP
GO:0036440 citrate synthase activity MF
GO:0042579 microbody CC
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044242 cellular lipid catabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044255 cellular lipid metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044282 small molecule catabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0046395 carboxylic acid catabolic process BP
GO:0046912 acyltransferase activity, acyl groups converted into alkyl on transfer MF
GO:0055044 symplast CC
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0072329 monocarboxylic acid catabolic process BP
GO:1901575 organic substance catabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00630 Glyoxylate and dicarboxylate metabolism -
map00020 Citrate cycle (TCA cycle) The citrate cycle (TCA cycle, Krebs cycle) is an important aerobic pathway for the final steps of the oxidation of carbohydrates and fatty acids. The cycle starts with acetyl-CoA, the activated form of acetate, derived from glycolysis and pyruvate oxidation for carbohydrates and from beta oxidation of fatty acids. The two-carbon acetyl group in acetyl-CoA is transferred to the four-carbon compound of oxaloacetate to form the six-carbon compound of citrate. In a series of reactions two carbons in citrate are oxidized to CO2 and the reaction pathway supplies NADH for use in the oxidative phosphorylation and other metabolic processes. The pathway also supplies important precursor metabolites including 2-oxoglutarate. At the end of the cycle the remaining four-carbon part is transformed back to oxaloacetate. According to the genome sequence data, many organisms seem to lack genes for the full cycle [MD:M00009], but contain genes for specific segments [MD:M00010 M00011].