PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	Pop_G17G025746 View in Genome Browser
Position	chrG17:3089036-3089854 (-) 818bp
Gene Type	gene
Gene Description (Protein Product)	Transcription factor
Organism	Populus alba x Populus glandulosa
Also AS	Potri.017G125700AT1G66370Potri.017G125700.v4.1

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	Pop_G18G078712 transcription factor Pop_G18G018647 Belongs to the aldehyde dehydrogenase family Pop_G19G009471 5-methyltetrahydropteroyltriglutamate-- homocysteine
Regulatory gene	Pop_A01G003801 transcription factor Pop_A01G004012 Myb/SANT-like DNA-binding domain Pop_A01G004132 transcription factor
Target gene	Pop_A01G000038 Nucleolar pre-ribosomal-associated protein 1 Pop_A01G002198 - Pop_A01G002199 TruB family pseudouridylate synthase (N terminal domain)

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000302	response to reactive oxygen species	BP
GO:0000303	response to superoxide	BP
GO:0000305	response to oxygen radical	BP
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	MF
GO:0000988	obsolete transcription factor activity, protein binding	MF
GO:0000989	obsolete transcription factor activity, transcription factor binding	MF
GO:0001067	transcription regulatory region nucleic acid binding	MF
GO:0001076	obsolete transcription factor activity, RNA polymerase II transcription factor binding	MF
GO:0001101	response to acid chemical	BP
GO:0001134	obsolete transcription regulator recruiting activity	MF
GO:0001135	obsolete RNA polymerase II transcription regulator recruiting activity	MF
GO:0002239	response to oomycetes	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003677	DNA binding	MF
GO:0003700	DNA-binding transcription factor activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006357	regulation of transcription by RNA polymerase II	BP
GO:0006801	superoxide metabolic process	BP
GO:0006950	response to stress	BP
GO:0006970	response to osmotic stress	BP
GO:0006979	response to oxidative stress	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009628	response to abiotic stimulus	BP
GO:0009636	response to toxic substance	BP
GO:0009651	response to salt stress	BP
GO:0009718	anthocyanin-containing compound biosynthetic process	BP
GO:0009719	response to endogenous stimulus	BP
GO:0009723	response to ethylene	BP
GO:0009725	response to hormone	BP
GO:0009733	response to auxin	BP
GO:0009743	response to carbohydrate	BP
GO:0009744	response to sucrose	BP
GO:0009745	sucrose mediated signaling	BP
GO:0009753	response to jasmonic acid	BP
GO:0009755	hormone-mediated signaling pathway	BP
GO:0009756	carbohydrate mediated signaling	BP
GO:0009812	flavonoid metabolic process	BP
GO:0009813	flavonoid biosynthetic process	BP
GO:0009867	jasmonic acid mediated signaling pathway	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009891	positive regulation of biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009962	regulation of flavonoid biosynthetic process	BP
GO:0009963	positive regulation of flavonoid biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010035	response to inorganic substance	BP
GO:0010182	sugar mediated signaling pathway	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019430	removal of superoxide radicals	BP
GO:0023052	signaling	BP
GO:0030154	cell differentiation	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031537	regulation of anthocyanin metabolic process	BP
GO:0031539	positive regulation of anthocyanin metabolic process	BP
GO:0031540	regulation of anthocyanin biosynthetic process	BP
GO:0031542	positive regulation of anthocyanin biosynthetic process	BP
GO:0032502	developmental process	BP
GO:0032870	cellular response to hormone stimulus	BP
GO:0033554	cellular response to stress	BP
GO:0034285	response to disaccharide	BP
GO:0034599	cellular response to oxidative stress	BP
GO:0034614	cellular response to reactive oxygen species	BP
GO:0042221	response to chemical	BP
GO:0042440	pigment metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043565	sequence-specific DNA binding	MF
GO:0044212	transcription cis-regulatory region binding	MF
GO:0044237	cellular metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046148	pigment biosynthetic process	BP
GO:0046283	anthocyanin-containing compound metabolic process	BP
GO:0048518	positive regulation of biological process	BP
GO:0048869	cellular developmental process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0071229	cellular response to acid chemical	BP
GO:0071310	cellular response to organic substance	BP
GO:0071322	cellular response to carbohydrate stimulus	BP
GO:0071324	cellular response to disaccharide stimulus	BP
GO:0071329	cellular response to sucrose stimulus	BP
GO:0071395	cellular response to jasmonic acid stimulus	BP
GO:0071450	cellular response to oxygen radical	BP
GO:0071451	cellular response to superoxide	BP
GO:0071495	cellular response to endogenous stimulus	BP
GO:0071704	organic substance metabolic process	BP
GO:0072593	reactive oxygen species metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080167	response to karrikin	BP
GO:0097159	organic cyclic compound binding	MF
GO:0097237	cellular response to toxic substance	BP
GO:0098754	detoxification	BP
GO:0098869	cellular oxidant detoxification	BP
GO:0140110	transcription regulator activity	MF
GO:1901363	heterocyclic compound binding	MF
GO:1901576	organic substance biosynthetic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:1990748	cellular detoxification	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP

KEGG Term	Name	Description
map04712	Circadian rhythm - plant	-