Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G18G080262
View in Genome Browser
Position
chrG18:4893201-4894329 (+)
1128bp
Gene Type
gene
Gene Description (Protein Product)
IMP cyclohydrolase activity
Organism
Populus alba x Populus glandulosa
Also AS Potri.010G114400AT2G35040Potri.010G114400.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_UnG091263 Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP
Pop_UnG091264 Plays an important role in the de novo pathway and in the salvage pathway of purine nucleotide biosynthesis. Catalyzes the first commited step in the biosynthesis of AMP from IMP
Pop_UnG037343 Serine hydroxymethyltransferase
Regulatory gene
Pop_A01G003796 isoform X1
Pop_A01G003952 transcription factor
Pop_A01G004056 dnaJ homolog subfamily C member

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0003360 brainstem development BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0003937 IMP cyclohydrolase activity MF
GO:0004643 phosphoribosylaminoimidazolecarboxamide formyltransferase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006082 organic acid metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006163 purine nucleotide metabolic process BP
GO:0006164 purine nucleotide biosynthetic process BP
GO:0006188 IMP biosynthetic process BP
GO:0006189 'de novo' IMP biosynthetic process BP
GO:0006575 cellular modified amino acid metabolic process BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006732 obsolete coenzyme metabolic process BP
GO:0006753 nucleoside phosphate metabolic process BP
GO:0006760 folic acid-containing compound metabolic process BP
GO:0006766 vitamin metabolic process BP
GO:0006767 water-soluble vitamin metabolic process BP
GO:0006793 phosphorus metabolic process BP
GO:0006796 phosphate-containing compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006950 response to stress BP
GO:0007049 cell cycle BP
GO:0007275 multicellular organism development BP
GO:0007399 nervous system development BP
GO:0007417 central nervous system development BP
GO:0007420 brain development BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009060 aerobic respiration BP
GO:0009108 obsolete coenzyme biosynthetic process BP
GO:0009116 nucleoside metabolic process BP
GO:0009117 nucleotide metabolic process BP
GO:0009123 nucleoside monophosphate metabolic process BP
GO:0009124 nucleoside monophosphate biosynthetic process BP
GO:0009126 purine nucleoside monophosphate metabolic process BP
GO:0009127 purine nucleoside monophosphate biosynthetic process BP
GO:0009150 purine ribonucleotide metabolic process BP
GO:0009152 purine ribonucleotide biosynthetic process BP
GO:0009156 ribonucleoside monophosphate biosynthetic process BP
GO:0009161 ribonucleoside monophosphate metabolic process BP
GO:0009165 nucleotide biosynthetic process BP
GO:0009167 purine ribonucleoside monophosphate metabolic process BP
GO:0009168 purine ribonucleoside monophosphate biosynthetic process BP
GO:0009235 cobalamin metabolic process BP
GO:0009259 ribonucleotide metabolic process BP
GO:0009260 ribonucleotide biosynthetic process BP
GO:0009396 folic acid-containing compound biosynthetic process BP
GO:0009611 response to wounding BP
GO:0009653 anatomical structure morphogenesis BP
GO:0009987 cellular process BP
GO:0010035 response to inorganic substance BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016053 organic acid biosynthetic process BP
GO:0016740 transferase activity MF
GO:0016741 transferase activity, transferring one-carbon groups MF
GO:0016742 hydroxymethyl-, formyl- and related transferase activity MF
GO:0016787 hydrolase activity MF
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds MF
GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines MF
GO:0017144 xenobiotic metabolic process BP
GO:0018130 heterocycle biosynthetic process BP
GO:0019238 cyclohydrolase activity MF
GO:0019438 aromatic compound biosynthetic process BP
GO:0019637 organophosphate metabolic process BP
GO:0019693 ribose phosphate metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0019953 sexual reproduction BP
GO:0021537 telencephalon development BP
GO:0021543 pallium development BP
GO:0021549 cerebellum development BP
GO:0021987 cerebral cortex development BP
GO:0022037 metencephalon development BP
GO:0022402 cell cycle process BP
GO:0022413 reproductive process in single-celled organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0030435 sporulation resulting in formation of a cellular spore BP
GO:0030437 ascospore formation BP
GO:0030900 forebrain development BP
GO:0030902 hindbrain development BP
GO:0031099 regeneration BP
GO:0031100 animal organ regeneration BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032505 reproduction of a single-celled organism BP
GO:0033013 tetrapyrrole metabolic process BP
GO:0034293 sexual sporulation BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0042060 wound healing BP
GO:0042221 response to chemical BP
GO:0042398 cellular modified amino acid biosynthetic process BP
GO:0042558 pteridine-containing compound metabolic process BP
GO:0042559 pteridine-containing compound biosynthetic process BP
GO:0042802 identical protein binding MF
GO:0042803 protein homodimerization activity MF
GO:0043436 oxoacid metabolic process BP
GO:0043603 amide metabolic process BP
GO:0043604 amide biosynthetic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0043934 sporulation BP
GO:0043935 sexual sporulation resulting in formation of a cellular spore BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044281 small molecule metabolic process BP
GO:0044283 small molecule biosynthetic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0045333 cellular respiration BP
GO:0046040 IMP metabolic process BP
GO:0046390 ribose phosphate biosynthetic process BP
GO:0046394 carboxylic acid biosynthetic process BP
GO:0046452 dihydrofolate metabolic process BP
GO:0046483 heterocycle metabolic process BP
GO:0046653 tetrahydrofolate metabolic process BP
GO:0046654 tetrahydrofolate biosynthetic process BP
GO:0046983 protein dimerization activity MF
GO:0048468 cell development BP
GO:0048513 animal organ development BP
GO:0048646 anatomical structure formation involved in morphogenesis BP
GO:0048731 system development BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050896 response to stimulus BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0051188 obsolete cofactor biosynthetic process BP
GO:0051321 meiotic cell cycle BP
GO:0051704 obsolete multi-organism process BP
GO:0055086 nucleobase-containing small molecule metabolic process BP
GO:0055114 obsolete oxidation-reduction process BP
GO:0060322 head development BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072521 purine-containing compound metabolic process BP
GO:0072522 purine-containing compound biosynthetic process BP
GO:0090407 organophosphate biosynthetic process BP
GO:1901135 carbohydrate derivative metabolic process BP
GO:1901137 carbohydrate derivative biosynthetic process BP
GO:1901293 nucleoside phosphate biosynthetic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901566 organonitrogen compound biosynthetic process BP
GO:1901576 organic substance biosynthetic process BP
GO:1901657 glycosyl compound metabolic process BP
GO:1903046 meiotic cell cycle process BP
KEGG Term Name Description
map03008 Ribosome biogenesis in eukaryotes Ribosomes are the cellular factories responsible for making proteins. In eukaryotes, ribosome biogenesis involves the production and correct assembly of four rRNAs and about 80 ribosomal proteins. It requires hundreds of factors not present in the mature particle. In the absence of these proteins, ribosome biogenesis is stalled and cell growth is terminated even under optimal growth conditions. The primary pre-rRNA transcript is assembled into the 90S pre-ribosome, which contains both 40S and 60S assembly factors. Within this complex, the pre-rRNA is cleaved. pre-60S ribosomes are subjected to several sequential processing steps in the nucleoplasm involving numerous assembly intermediates before it is exported to the cytoplasm and matured into the 60S ribosomal subunit. The pre-40S ribosome is matured to the small ribosomal subunit in the cytoplasm by cleavage.
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00670 One carbon pool by folate -
map00230 Purine metabolism -