Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Expresssion
Pathway
Basic Information
Gene ID
Pop_G18G083266
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Position
chrG18:5892733-5898102 (+)
5369bp
Gene Type
gene
Gene Description (Protein Product)
Aspartate aminotransferase
Organism
Populus alba x Populus glandulosa
Also AS Potri.018G082500AT5G19550Potri.018G082500.v4.1

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Pop_G19G090771 Tyrosine dopa decarboxylase
Pop_G19G009236 Belongs to the Glu Leu Phe Val dehydrogenases family
Pop_UnG069737 Converts the prephenate produced from the shikimate- chorismate pathway into phenylalanine
Regulatory gene
Pop_A01G004012 Myb/SANT-like DNA-binding domain
Pop_A01G004240 Trihelix transcription factor
Pop_A01G010154 Trihelix transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity MF
GO:0005488 binding MF
GO:0005507 copper ion binding MF
GO:0005575 cellular_component CC
GO:0005618 cell wall CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005777 peroxisome CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0005911 cell-cell junction CC
GO:0006082 organic acid metabolic process BP
GO:0006091 generation of precursor metabolites and energy BP
GO:0006099 tricarboxylic acid cycle BP
GO:0006101 citrate metabolic process BP
GO:0006103 2-oxoglutarate metabolic process BP
GO:0006520 amino acid metabolic process BP
GO:0006522 alanine metabolic process BP
GO:0006531 aspartate metabolic process BP
GO:0006536 glutamate metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0007275 multicellular organism development BP
GO:0007568 aging BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008483 transaminase activity MF
GO:0009060 aerobic respiration BP
GO:0009064 glutamine family amino acid metabolic process BP
GO:0009066 aspartate family amino acid metabolic process BP
GO:0009078 pyruvate family amino acid metabolic process BP
GO:0009506 plasmodesma CC
GO:0009536 plastid CC
GO:0009987 cellular process BP
GO:0010150 leaf senescence BP
GO:0015980 energy derivation by oxidation of organic compounds BP
GO:0016020 membrane CC
GO:0016740 transferase activity MF
GO:0016769 transferase activity, transferring nitrogenous groups MF
GO:0016999 antibiotic metabolic process BP
GO:0017144 xenobiotic metabolic process BP
GO:0019752 carboxylic acid metabolic process BP
GO:0030054 cell junction CC
GO:0030312 external encapsulating structure CC
GO:0031090 organelle membrane CC
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0042579 microbody CC
GO:0043167 ion binding MF
GO:0043169 cation binding MF
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043436 oxoacid metabolic process BP
GO:0043648 dicarboxylic acid metabolic process BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044281 small molecule metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045333 cellular respiration BP
GO:0046872 metal ion binding MF
GO:0046914 transition metal ion binding MF
GO:0048366 leaf development BP
GO:0048367 shoot system development BP
GO:0048731 system development BP
GO:0048827 phyllome development BP
GO:0048856 anatomical structure development BP
GO:0051186 obsolete cofactor metabolic process BP
GO:0055044 symplast CC
GO:0055114 obsolete oxidation-reduction process BP
GO:0071704 organic substance metabolic process BP
GO:0071944 cell periphery CC
GO:0072350 tricarboxylic acid metabolic process BP
GO:0090693 plant organ senescence BP
GO:0098588 bounding membrane of organelle CC
GO:0098805 membrane CC
GO:0099402 plant organ development BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901605 alpha-amino acid metabolic process BP
KEGG Term Name Description
map01110 Biosynthesis of secondary metabolites -
map01100 Metabolic pathways -
map00960 Tropane, piperidine and pyridine alkaloid biosynthesis -
map00950 Isoquinoline alkaloid biosynthesis Isoquinoline alkaloids are tyrosine-derived plant alkaloids with an isoquinoline skeleton. Among them benzylisoquinoline alkaloids form an important group with potent pharmacological activity, including analgesic compounds of morphine and codeine, and anti-infective agents of berberine, palmatine, and magnoflorine. Biosynthesis of isoquinoline alkaloids proceeds via decarboxylation of tyrosine or DOPA to yield dopamine, which together with 4-hydroxyphenylacetaldehyde, an aldehyde derived from tyrosine, is converted to reticuline, an important precursor of various benzylisoquinoline alkaloids.
map00710 Carbon fixation in photosynthetic organisms -
map00400 Phenylalanine, tyrosine and tryptophan biosynthesis -
map00360 Phenylalanine metabolism -
map00350 Tyrosine metabolism -
map00330 Arginine and proline metabolism -
map00270 Cysteine and methionine metabolism Cysteine and methionine are sulfur-containing amino acids. Cysteine is synthesized from serine through different pathways in different organism groups. In bacteria and plants, cysteine is converted from serine (via acetylserine) by transfer of hydrogen sulfide [MD:M00021]. In animals, methionine-derived homocysteine is used as sulfur source and its condensation product with serine (cystathionine) is converted to cysteine [MD:M00338]. Cysteine is metabolized to pyruvate in multiple routes. Methionine is an essential amino acid, which animals cannot synthesize. In bacteria and plants, methionine is synthesized from aspartate [MD:M00017]. S-Adenosylmethionine (SAM), synthesized from methionine and ATP, is a methyl group donor in many important transfer reactions including DNA methylation for regulation of gene expression. SAM may also be used to regenerate methionine in the methionine salvage pathway [MD:M00034].
map00250 Alanine, aspartate and glutamate metabolism -