Basic Information
Gene ID
Position
tig00082343_0_63748:40360-49579 (+)
9219bp
Gene Type
gene
Gene Description (Protein Product)
"SANT SWI3
Organism
Also AS Potri.010G220000AT3G52250Potri.010G220000.v4.1

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Target gene
Pop_A01G000040 Reverse transcriptase (RNA-dependent DNA polymerase)
Pop_A01G002200 quinone-oxidoreductase homolog, chloroplastic

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail

Expression Profile
DataSet Number of Samples expressed(TPM>1) Mean Min Max Standard deviation(SD) Coeffcient variation(CV)


Pathway
GO Term Description GO Category
GO:0000122 negative regulation of transcription by RNA polymerase II BP
GO:0000226 microtubule cytoskeleton organization BP
GO:0000228 nuclear chromosome CC
GO:0000785 chromatin CC
GO:0000790 chromatin CC
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001085 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001102 RNA polymerase II-specific DNA-binding transcription factor binding MF
GO:0001932 regulation of protein phosphorylation BP
GO:0001933 negative regulation of protein phosphorylation BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003700 DNA-binding transcription factor activity MF
GO:0003712 transcription coregulator activity MF
GO:0003714 transcription corepressor activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005694 chromosome CC
GO:0005737 cytoplasm CC
GO:0005819 spindle CC
GO:0005829 cytosol CC
GO:0005856 cytoskeleton CC
GO:0005874 microtubule CC
GO:0005876 spindle microtubule CC
GO:0006109 regulation of carbohydrate metabolic process BP
GO:0006110 regulation of glycolytic process BP
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006140 regulation of nucleotide metabolic process BP
GO:0006351 DNA-templated transcription BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006366 transcription by RNA polymerase II BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007010 cytoskeleton organization BP
GO:0007017 microtubule-based process BP
GO:0007049 cell cycle BP
GO:0007051 spindle organization BP
GO:0007623 circadian rhythm BP
GO:0008134 transcription factor binding MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009058 biosynthetic process BP
GO:0009059 macromolecule biosynthetic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009968 negative regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010563 negative regulation of phosphorus metabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010628 positive regulation of gene expression BP
GO:0010629 negative regulation of gene expression BP
GO:0010646 regulation of cell communication BP
GO:0010648 negative regulation of cell communication BP
GO:0015630 microtubule cytoskeleton CC
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016922 nuclear receptor binding MF
GO:0017053 transcription repressor complex CC
GO:0018130 heterocycle biosynthetic process BP
GO:0019216 regulation of lipid metabolic process BP
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019220 regulation of phosphate metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019438 aromatic compound biosynthetic process BP
GO:0019899 enzyme binding MF
GO:0022402 cell cycle process BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023057 negative regulation of signaling BP
GO:0030808 regulation of nucleotide biosynthetic process BP
GO:0030811 regulation of nucleotide catabolic process BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031327 negative regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031399 regulation of protein modification process BP
GO:0031400 negative regulation of protein modification process BP
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032269 negative regulation of protein metabolic process BP
GO:0032368 regulation of lipid transport BP
GO:0032774 RNA biosynthetic process BP
GO:0032872 regulation of stress-activated MAPK cascade BP
GO:0032873 negative regulation of stress-activated MAPK cascade BP
GO:0032879 regulation of localization BP
GO:0032890 regulation of organic acid transport BP
GO:0032991 protein-containing complex CC
GO:0033613 DNA-binding transcription factor binding MF
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0034645 cellular macromolecule biosynthetic process BP
GO:0034654 nucleobase-containing compound biosynthetic process BP
GO:0035257 nuclear receptor binding MF
GO:0042325 regulation of phosphorylation BP
GO:0042326 negative regulation of phosphorylation BP
GO:0042826 histone deacetylase binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043269 regulation of monoatomic ion transport BP
GO:0043408 regulation of MAPK cascade BP
GO:0043409 negative regulation of MAPK cascade BP
GO:0043467 regulation of generation of precursor metabolites and energy BP
GO:0043470 regulation of carbohydrate catabolic process BP
GO:0044070 regulation of monoatomic anion transport BP
GO:0044085 cellular component biogenesis BP
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044249 cellular biosynthetic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044271 cellular nitrogen compound biosynthetic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044427 obsolete chromosomal part CC
GO:0044428 obsolete nuclear part CC
GO:0044430 obsolete cytoskeletal part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044454 obsolete nuclear chromosome part CC
GO:0044464 obsolete cell part CC
GO:0045892 negative regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045936 negative regulation of phosphate metabolic process BP
GO:0046328 regulation of JNK cascade BP
GO:0046329 negative regulation of JNK cascade BP
GO:0046483 heterocycle metabolic process BP
GO:0046966 nuclear thyroid hormone receptor binding MF
GO:0048511 rhythmic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048523 negative regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048585 negative regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051049 regulation of transport BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051174 regulation of phosphorus metabolic process BP
GO:0051193 obsolete regulation of cofactor metabolic process BP
GO:0051196 obsolete regulation of coenzyme metabolic process BP
GO:0051225 spindle assembly BP
GO:0051246 regulation of protein metabolic process BP
GO:0051248 negative regulation of protein metabolic process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051427 hormone receptor binding MF
GO:0060147 regulation of post-transcriptional gene silencing BP
GO:0060149 negative regulation of post-transcriptional gene silencing BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0060964 regulation of miRNA-mediated gene silencing BP
GO:0060965 negative regulation of miRNA-mediated gene silencing BP
GO:0060966 regulation of gene silencing by RNA BP
GO:0060967 negative regulation of gene silencing by RNA BP
GO:0060968 obsolete regulation of gene silencing BP
GO:0060969 obsolete negative regulation of gene silencing BP
GO:0062012 regulation of small molecule metabolic process BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070302 regulation of stress-activated protein kinase signaling cascade BP
GO:0070303 negative regulation of stress-activated protein kinase signaling cascade BP
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA BP
GO:0070925 organelle assembly BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0072361 obsolete regulation of glycolytic process by regulation of transcription from RNA polymerase II promoter BP
GO:0072362 obsolete regulation of glycolytic process by negative regulation of transcription from RNA polymerase II promoter BP
GO:0072367 obsolete regulation of lipid transport by regulation of transcription from RNA polymerase II promoter BP
GO:0072368 obsolete regulation of lipid transport by negative regulation of transcription from RNA polymerase II promoter BP
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0097659 nucleic acid-templated transcription BP
GO:0098679 obsolete regulation of carbohydrate catabolic process by regulation of transcription from RNA polymerase II promoter BP
GO:0099080 supramolecular complex CC
GO:0099081 supramolecular polymer CC
GO:0099512 supramolecular fiber CC
GO:0099513 polymeric cytoskeletal fiber CC
GO:0140110 transcription regulator activity MF
GO:1900371 regulation of purine nucleotide biosynthetic process BP
GO:1900402 obsolete regulation of carbohydrate metabolic process by regulation of transcription from RNA polymerase II promoter BP
GO:1900542 regulation of purine nucleotide metabolic process BP
GO:1901360 organic cyclic compound metabolic process BP
GO:1901362 organic cyclic compound biosynthetic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901576 organic substance biosynthetic process BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902532 negative regulation of intracellular signal transduction BP
GO:1902679 negative regulation of RNA biosynthetic process BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903507 negative regulation of nucleic acid-templated transcription BP
GO:1903578 regulation of ATP metabolic process BP
GO:1903798 regulation of miRNA maturation BP
GO:1903799 negative regulation of miRNA maturation BP
GO:1905952 regulation of lipid localization BP
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2000113 negative regulation of cellular macromolecule biosynthetic process BP
GO:2000191 regulation of fatty acid transport BP
GO:2001141 regulation of RNA biosynthetic process BP
GO:2001169 regulation of ATP biosynthetic process BP