Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AALBA5B080836
Position
aalba5_s00007889:88849-90298 (-)
1449bp
Gene Type
gene
Gene Description (Protein Product)
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Organism
Abies alba
Also AS AT1G11020

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B821044 Belongs to the small GTPase superfamily. Arf family
Regulatory gene
AALBA5B003860 Myb-like protein L
AALBA5B014981 transcription factor
AALBA5B023305 dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway
GO Term Description GO Category
GO:0000209 protein polyubiquitination BP
GO:0000323 lytic vacuole CC
GO:0002376 immune system process BP
GO:0002495 antigen processing and presentation of peptide antigen via MHC class II BP
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II BP
GO:0003674 molecular_function MF
GO:0003824 catalytic activity MF
GO:0004842 ubiquitin-protein transferase activity MF
GO:0005102 signaling receptor binding MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005768 endosome CC
GO:0005773 vacuole CC
GO:0006464 protein modification process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009889 regulation of biosynthetic process BP
GO:0009890 negative regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009987 cellular process BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010558 negative regulation of macromolecule biosynthetic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0012505 endomembrane system CC
GO:0016567 protein ubiquitination BP
GO:0016740 transferase activity MF
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019787 ubiquitin-like protein transferase activity MF
GO:0019882 antigen processing and presentation BP
GO:0031410 cytoplasmic vesicle CC
GO:0031982 vesicle CC
GO:0032446 protein modification by small protein conjugation BP
GO:0036211 protein modification process BP
GO:0042287 MHC protein binding MF
GO:0042289 MHC class II protein binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043412 macromolecule modification BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044267 protein metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045346 regulation of MHC class II biosynthetic process BP
GO:0045347 negative regulation of MHC class II biosynthetic process BP
GO:0048002 antigen processing and presentation of peptide antigen BP
GO:0048519 negative regulation of biological process BP
GO:0050789 regulation of biological process BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061630 ubiquitin protein ligase activity MF
GO:0061659 ubiquitin-like protein ligase activity MF
GO:0065007 biological regulation BP
GO:0070647 protein modification by small protein conjugation or removal BP
GO:0071704 organic substance metabolic process BP
GO:0097708 intracellular vesicle CC
GO:0140096 catalytic activity, acting on a protein MF
GO:1901564 organonitrogen compound metabolic process BP