Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AALBA5B1119172
Position
aalba5_s00613449:1976-2420 (+)
444bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Abies alba
Also AS AT3G23325

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B693756 Small nuclear ribonucleoprotein
AALBA5B1156706 U2 small nuclear ribonucleoprotein
AALBA5B308507 splicing factor 3A subunit 1
Regulatory gene
AALBA5B008339 Dehydration-responsive element-binding protein 3-like
AALBA5B013896 lysine-specific demethylase
AALBA5B016053 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.