PPGR - Gene Detail

Basic Information

Gene ID	AALBA5B370877
Position	aalba5_s00048289:33281-35451 (+) 2170bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the actin family
Organism	Abies alba
Also AS	AT3G27000

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

AALBA5B583830 Functions as component of the Arp2 3 complex which is involved in regulation of actin polymerization and together with an activating nucleation-promoting factor (NPF) mediates the formation of branched actin networks

AALBA5B613890 Non-specific serine threonine protein kinase

AALBA5B530603 Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope

Regulatory gene

AALBA5B013896 lysine-specific demethylase

AALBA5B023305 dof zinc finger protein

AALBA5B043151 homeobox-leucine zipper protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000902	cell morphogenesis	BP
GO:0000904	cell morphogenesis involved in differentiation	BP
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005856	cytoskeleton	CC
GO:0005885	Arp2/3 protein complex	CC
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007015	actin filament organization	BP
GO:0008150	biological_process	BP
GO:0009653	anatomical structure morphogenesis	BP
GO:0009825	multidimensional cell growth	BP
GO:0009888	tissue development	BP
GO:0009987	cellular process	BP
GO:0010026	trichome differentiation	BP
GO:0010090	trichome morphogenesis	BP
GO:0015629	actin cytoskeleton	CC
GO:0016043	cellular component organization	BP
GO:0016049	cell growth	BP
GO:0030029	actin filament-based process	BP
GO:0030036	actin cytoskeleton organization	BP
GO:0030154	cell differentiation	BP
GO:0032502	developmental process	BP
GO:0032989	cellular component morphogenesis	BP
GO:0032991	protein-containing complex	CC
GO:0040007	growth	BP
GO:0043226	organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044430	obsolete cytoskeletal part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0048468	cell development	BP
GO:0048856	anatomical structure development	BP
GO:0048869	cellular developmental process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090558	plant epidermis development	BP
GO:0090626	plant epidermis morphogenesis	BP
GO:0097435	supramolecular fiber organization	BP

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.