Basic Information
Gene ID
AALBA5B455772
Position
aalba5_s00171729:20199-20776 (+)
577bp
Gene Type
gene
Gene Description (Protein Product)
"DNA-directed RNA polymerases I
Organism
Also AS AT1G61700

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B736008 RNA polymerase Rpb3/Rpb11 dimerisation domain
AALBA5B574882 DNA-directed RNA polymerase II subunit
AALBA5B511537 DNA-directed RNA polymerases
Regulatory gene
AALBA5B003860 Myb-like protein L
AALBA5B014147 Transcription factor
AALBA5B014981 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03020 RNA polymerase -