Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AALBA5B558044
Position
aalba5_s00040291:26016-27555 (-)
1539bp
Gene Type
gene
Gene Description (Protein Product)
Ubiquitin domain-containing protein
Organism
Abies alba
Also AS AT2G17200

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B925050 npl4-like protein
AALBA5B838308 Peroxisome biogenesis protein
AALBA5B793425 npl4-like protein
Regulatory gene
AALBA5B013896 lysine-specific demethylase
AALBA5B023305 dof zinc finger protein
AALBA5B055678 zinc finger

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000045 autophagosome assembly BP
GO:0001666 response to hypoxia BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005654 nucleoplasm CC
GO:0005737 cytoplasm CC
GO:0005773 vacuole CC
GO:0005776 autophagosome CC
GO:0005783 endoplasmic reticulum CC
GO:0005829 cytosol CC
GO:0005886 plasma membrane CC
GO:0006508 proteolysis BP
GO:0006511 ubiquitin-dependent protein catabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006914 autophagy BP
GO:0006950 response to stress BP
GO:0006996 organelle organization BP
GO:0007033 vacuole organization BP
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0009056 catabolic process BP
GO:0009057 macromolecule catabolic process BP
GO:0009628 response to abiotic stimulus BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009896 positive regulation of catabolic process BP
GO:0009966 regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010243 response to organonitrogen compound BP
GO:0010498 proteasomal protein catabolic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010646 regulation of cell communication BP
GO:0010941 regulation of cell death BP
GO:0010959 regulation of metal ion transport BP
GO:0012505 endomembrane system CC
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016234 inclusion body CC
GO:0016235 aggresome CC
GO:0016236 macroautophagy BP
GO:0019222 regulation of metabolic process BP
GO:0019538 protein metabolic process BP
GO:0019899 enzyme binding MF
GO:0019900 kinase binding MF
GO:0019941 modification-dependent protein catabolic process BP
GO:0022411 cellular component disassembly BP
GO:0022607 cellular component assembly BP
GO:0022898 regulation of transmembrane transporter activity BP
GO:0023051 regulation of signaling BP
GO:0030162 regulation of proteolysis BP
GO:0030163 protein catabolic process BP
GO:0030433 ubiquitin-dependent ERAD pathway BP
GO:0031323 regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031331 positive regulation of cellular catabolic process BP
GO:0031396 regulation of protein ubiquitination BP
GO:0031398 positive regulation of protein ubiquitination BP
GO:0031399 regulation of protein modification process BP
GO:0031401 positive regulation of protein modification process BP
GO:0031593 polyubiquitin modification-dependent protein binding MF
GO:0031974 membrane-enclosed lumen CC
GO:0031981 nuclear lumen CC
GO:0032268 regulation of protein metabolic process BP
GO:0032270 positive regulation of protein metabolic process BP
GO:0032409 regulation of transporter activity BP
GO:0032410 negative regulation of transporter activity BP
GO:0032412 regulation of monoatomic ion transmembrane transporter activity BP
GO:0032413 negative regulation of ion transmembrane transporter activity BP
GO:0032434 regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process BP
GO:0032879 regulation of localization BP
GO:0032984 protein-containing complex disassembly BP
GO:0032991 protein-containing complex CC
GO:0033554 cellular response to stress BP
GO:0034762 regulation of transmembrane transport BP
GO:0034763 negative regulation of transmembrane transport BP
GO:0034765 regulation of monoatomic ion transmembrane transport BP
GO:0034766 negative regulation of monoatomic ion transmembrane transport BP
GO:0034976 response to endoplasmic reticulum stress BP
GO:0035973 aggrephagy BP
GO:0036293 response to decreased oxygen levels BP
GO:0036294 cellular response to decreased oxygen levels BP
GO:0036503 ERAD pathway BP
GO:0042176 regulation of protein catabolic process BP
GO:0042221 response to chemical BP
GO:0042802 identical protein binding MF
GO:0042981 regulation of apoptotic process BP
GO:0043067 regulation of programmed cell death BP
GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process BP
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043269 regulation of monoatomic ion transport BP
GO:0043271 negative regulation of monoatomic ion transport BP
GO:0043632 modification-dependent macromolecule catabolic process BP
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044092 negative regulation of molecular function BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044248 cellular catabolic process BP
GO:0044257 protein catabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044265 cellular macromolecule catabolic process BP
GO:0044267 protein metabolic process BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044428 obsolete nuclear part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045732 positive regulation of protein catabolic process BP
GO:0045862 positive regulation of proteolysis BP
GO:0048471 perinuclear region of cytoplasm CC
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051049 regulation of transport BP
GO:0051051 negative regulation of transport BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051246 regulation of protein metabolic process BP
GO:0051247 positive regulation of protein metabolic process BP
GO:0051603 proteolysis involved in protein catabolic process BP
GO:0051716 cellular response to stimulus BP
GO:0051924 regulation of calcium ion transport BP
GO:0051926 negative regulation of calcium ion transport BP
GO:0060255 regulation of macromolecule metabolic process BP
GO:0061136 regulation of proteasomal protein catabolic process BP
GO:0061912 selective autophagy BP
GO:0061919 process utilizing autophagic mechanism BP
GO:0065007 biological regulation BP
GO:0065009 regulation of molecular function BP
GO:0070013 intracellular organelle lumen CC
GO:0070482 response to oxygen levels BP
GO:0070887 cellular response to chemical stimulus BP
GO:0070925 organelle assembly BP
GO:0071453 cellular response to oxygen levels BP
GO:0071456 cellular response to hypoxia BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0071944 cell periphery CC
GO:0080090 regulation of primary metabolic process BP
GO:0080134 regulation of response to stress BP
GO:0080135 regulation of cellular response to stress BP
GO:0097352 autophagosome maturation BP
GO:0140030 modification-dependent protein binding MF
GO:1900407 regulation of cellular response to oxidative stress BP
GO:1901019 regulation of calcium ion transmembrane transporter activity BP
GO:1901020 negative regulation of calcium ion transmembrane transporter activity BP
GO:1901339 regulation of store-operated calcium channel activity BP
GO:1901340 negative regulation of store-operated calcium channel activity BP
GO:1901564 organonitrogen compound metabolic process BP
GO:1901565 organonitrogen compound catabolic process BP
GO:1901575 organic substance catabolic process BP
GO:1901698 response to nitrogen compound BP
GO:1901800 positive regulation of proteasomal protein catabolic process BP
GO:1902175 regulation of oxidative stress-induced intrinsic apoptotic signaling pathway BP
GO:1902531 regulation of intracellular signal transduction BP
GO:1902882 regulation of response to oxidative stress BP
GO:1903050 regulation of proteolysis involved in protein catabolic process BP
GO:1903052 positive regulation of proteolysis involved in protein catabolic process BP
GO:1903069 regulation of ER-associated ubiquitin-dependent protein catabolic process BP
GO:1903071 positive regulation of ER-associated ubiquitin-dependent protein catabolic process BP
GO:1903169 regulation of calcium ion transmembrane transport BP
GO:1903170 negative regulation of calcium ion transmembrane transport BP
GO:1903201 regulation of oxidative stress-induced cell death BP
GO:1903320 regulation of protein modification by small protein conjugation or removal BP
GO:1903322 positive regulation of protein modification by small protein conjugation or removal BP
GO:1903362 regulation of protein catabolic process BP
GO:1903364 positive regulation of protein catabolic process BP
GO:1904062 regulation of monoatomic cation transmembrane transport BP
GO:1904063 negative regulation of cation transmembrane transport BP
GO:1904292 regulation of ERAD pathway BP
GO:1904294 positive regulation of ERAD pathway BP
GO:1905037 autophagosome organization BP
GO:1905897 regulation of response to endoplasmic reticulum stress BP
GO:1905898 positive regulation of response to endoplasmic reticulum stress BP
GO:2000058 regulation of ubiquitin-dependent protein catabolic process BP
GO:2000060 positive regulation of ubiquitin-dependent protein catabolic process BP
GO:2001233 regulation of apoptotic signaling pathway BP
GO:2001242 regulation of intrinsic apoptotic signaling pathway BP
GO:2001257 regulation of cation channel activity BP
GO:2001258 negative regulation of cation channel activity BP
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.