Basic Information
Gene ID
AALBA5B612072
Position
aalba5_s00290201:1104-5889 (-)
4785bp
Gene Type
gene
Gene Description (Protein Product)
ATP-dependent RNA helicase
Organism
Also AS AT2G30800

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B782027 ATP-dependent RNA helicase
AALBA5B882556 ATP-dependent RNA helicase
AALBA5B798645 Helicase associated domain (HA2) Add an annotation
Regulatory gene
AALBA5B023305 dof zinc finger protein
AALBA5B087213 Cyclic dof factor
AALBA5B1073687 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.