Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
AALBA5B660369
Position
aalba5_s00145636:22479-23841 (+)
1362bp
Gene Type
gene
Gene Description (Protein Product)
Belongs to the WD repeat SEC13 family
Organism
Abies alba
Also AS AT2G30050

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B750570 transport) protein
AALBA5B930304 Nuclear pore complex protein
AALBA5B992773 Nuclear pore complex protein
Regulatory gene
AALBA5B002813 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
AALBA5B003860 Myb-like protein L
AALBA5B014981 transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000323 lytic vacuole CC
GO:0002376 immune system process BP
GO:0002474 antigen processing and presentation of peptide antigen via MHC class I BP
GO:0002478 antigen processing and presentation of exogenous peptide antigen BP
GO:0002495 antigen processing and presentation of peptide antigen via MHC class II BP
GO:0002504 antigen processing and presentation of peptide or polysaccharide antigen via MHC class II BP
GO:0003674 molecular_function MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005635 nuclear envelope CC
GO:0005643 nuclear pore CC
GO:0005654 nucleoplasm CC
GO:0005730 nucleolus CC
GO:0005737 cytoplasm CC
GO:0005764 lysosome CC
GO:0005765 lysosomal membrane CC
GO:0005773 vacuole CC
GO:0005774 vacuolar membrane CC
GO:0005783 endoplasmic reticulum CC
GO:0005789 endoplasmic reticulum membrane CC
GO:0005798 Golgi-associated vesicle CC
GO:0005829 cytosol CC
GO:0006810 transport BP
GO:0006886 intracellular protein transport BP
GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport BP
GO:0006900 vesicle budding from membrane BP
GO:0006901 vesicle coating BP
GO:0006903 vesicle targeting BP
GO:0006996 organelle organization BP
GO:0008104 protein localization BP
GO:0008150 biological_process BP
GO:0009966 regulation of signal transduction BP
GO:0009967 positive regulation of signal transduction BP
GO:0009987 cellular process BP
GO:0010646 regulation of cell communication BP
GO:0010647 positive regulation of cell communication BP
GO:0012505 endomembrane system CC
GO:0012506 vesicle membrane CC
GO:0012507 ER to Golgi transport vesicle membrane CC
GO:0015031 protein transport BP
GO:0015833 peptide transport BP
GO:0016020 membrane CC
GO:0016043 cellular component organization BP
GO:0016050 vesicle organization BP
GO:0016192 vesicle-mediated transport BP
GO:0019882 antigen processing and presentation BP
GO:0019884 antigen processing and presentation of exogenous antigen BP
GO:0019886 antigen processing and presentation of exogenous peptide antigen via MHC class II BP
GO:0022607 cellular component assembly BP
GO:0023051 regulation of signaling BP
GO:0023056 positive regulation of signaling BP
GO:0030117 membrane coat CC
GO:0030120 vesicle coat CC
GO:0030127 COPII vesicle coat CC
GO:0030133 transport vesicle CC
GO:0030134 COPII-coated ER to Golgi transport vesicle CC
GO:0030135 coated vesicle CC
GO:0030658 transport vesicle membrane CC
GO:0030659 cytoplasmic vesicle membrane CC
GO:0030660 Golgi-associated vesicle membrane CC
GO:0030662 coated vesicle membrane CC
GO:0031080 nuclear pore outer ring CC
GO:0031090 organelle membrane CC
GO:0031410 cytoplasmic vesicle CC
GO:0031967 organelle envelope CC
GO:0031974 membrane-enclosed lumen CC
GO:0031975 envelope CC
GO:0031981 nuclear lumen CC
GO:0031982 vesicle CC
GO:0031984 organelle subcompartment CC
GO:0032006 regulation of TOR signaling BP
GO:0032008 positive regulation of TOR signaling BP
GO:0032991 protein-containing complex CC
GO:0033036 macromolecule localization BP
GO:0034613 protein localization BP
GO:0034622 protein-containing complex assembly BP
GO:0035459 vesicle cargo loading BP
GO:0035859 Seh1-associated complex CC
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network CC
GO:0042802 identical protein binding MF
GO:0042886 amide transport BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043233 organelle lumen CC
GO:0043933 protein-containing complex organization BP
GO:0044085 cellular component biogenesis BP
GO:0044422 obsolete organelle part CC
GO:0044424 obsolete intracellular part CC
GO:0044425 obsolete membrane part CC
GO:0044428 obsolete nuclear part CC
GO:0044432 obsolete endoplasmic reticulum part CC
GO:0044433 obsolete cytoplasmic vesicle part CC
GO:0044437 obsolete vacuolar part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044446 obsolete intracellular organelle part CC
GO:0044464 obsolete cell part CC
GO:0045184 establishment of protein localization BP
GO:0046907 intracellular transport BP
GO:0048002 antigen processing and presentation of peptide antigen BP
GO:0048193 Golgi vesicle transport BP
GO:0048194 Golgi vesicle budding BP
GO:0048199 vesicle targeting, to, from or within Golgi BP
GO:0048207 vesicle targeting, rough ER to cis-Golgi BP
GO:0048208 COPII vesicle coating BP
GO:0048475 coated membrane CC
GO:0048518 positive regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048583 regulation of response to stimulus BP
GO:0048584 positive regulation of response to stimulus BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0051179 localization BP
GO:0051234 establishment of localization BP
GO:0051640 organelle localization BP
GO:0051641 cellular localization BP
GO:0051648 vesicle localization BP
GO:0051649 establishment of localization in cell BP
GO:0051650 establishment of vesicle localization BP
GO:0051656 establishment of organelle localization BP
GO:0051668 localization within membrane BP
GO:0061024 membrane organization BP
GO:0061700 GATOR2 complex CC
GO:0065003 protein-containing complex assembly BP
GO:0065007 biological regulation BP
GO:0070013 intracellular organelle lumen CC
GO:0070727 cellular macromolecule localization BP
GO:0071702 organic substance transport BP
GO:0071705 nitrogen compound transport BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090110 COPII-coated vesicle cargo loading BP
GO:0090114 COPII-coated vesicle budding BP
GO:0097708 intracellular vesicle CC
GO:0098588 bounding membrane of organelle CC
GO:0098796 membrane protein complex CC
GO:0098805 membrane CC
GO:0098827 endoplasmic reticulum subcompartment CC
GO:0098852 lytic vacuole membrane CC
GO:1902531 regulation of intracellular signal transduction BP
GO:1902533 positive regulation of intracellular signal transduction BP
KEGG Term Name Description
map04141 Protein processing in endoplasmic reticulum The endoplasmic reticulum (ER) is a subcellular organelle where proteins are folded with the help of lumenal chaperones. Newly synthesized peptides enter the ER via the sec61 pore and are glycosylated. Correctly folded proteins are packaged into transport vesicles that shuttle them to the Golgi complex. Misfolded proteins are retained within the ER lumen in complex with molecular chaperones. Proteins that are terminally misfolded bind to BiP and are directed toward degradation through the proteasome in a process called ER-associated degradation (ERAD). Accumulation of misfolded proteins in the ER causes ER stress and activates a signaling pathway called the unfolded protein response (UPR). In certain severe situations, however, the protective mechanisms activated by the UPR are not sufficient to restore normal ER function and cells die by apoptosis.
map03013 RNA transport RNA transport from the nucleus to the cytoplasm is fundamental for gene expression. The different RNA species that are produced in the nucleus are exported through the nuclear pore complexes (NPCs) via mobile export receptors. The majority of RNAs, such as tRNAs, rRNAs, and U snRNAs, are transported by specific export receptors, which belong to the karyopherin-beta family proteins. A feature of karyopherins is their regulation by the small GTPase Ran. However, general mRNA export is mechanistically different. Nuclear export of mRNAs is functionally coupled to different steps in gene expression processes, such as transcription, splicing, 3'-end formation and even translation.