Basic Information
Gene ID
AALBA5B924403
Position
aalba5_s00020157:10234-10461 (+)
227bp
Gene Type
gene
Gene Description (Protein Product)
Calcium-binding protein PBP1-like
Organism
Also AS AT2G46600

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B942070 atexp4,atexpa4,athexp alpha 1.6,expa4
AALBA5B943136 calcium-binding protein
AALBA5B970051 Mediator-associated protein 1-like
Regulatory gene
AALBA5B002260 pumilio homolog
AALBA5B009684 Splicing factor U2af small subunit
AALBA5B014147 Transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.