Basic Information
Gene ID
AALBA5B941581
Position
aalba5_s00196580:2287-3409 (-)
1122bp
Gene Type
gene
Gene Description (Protein Product)
Transcription factor TFIIH complex subunit Tfb5
Organism
Also AS AT1G62886

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
AALBA5B995933 Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
AALBA5B990104 Transcription initiation factor TFIID subunit
AALBA5B989456 Transcription initiation factor TFIID subunit
Regulatory gene
AALBA5B001463 Myb family transcription factor APL
AALBA5B014173 Ocs element-binding factor
AALBA5B043151 homeobox-leucine zipper protein

Load All Networks

Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03022 Basal transcription factors -