PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	EVM0011969 View in Genome Browser
Position	GWHASIS00001978:47287781-47291682 (-) 3901bp
Gene Type	gene
Gene Description (Protein Product)	NUP50 (Nucleoporin 50 kDa)
Organism	Acer catalpifolium
Also AS	AT1G52380

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

EVM0031631 GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle

EVM0012814 Belongs to the mitochondrial carrier (TC 2.A.29) family

EVM0020885 This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000054	ribosomal subunit export from nucleus	BP
GO:0000056	ribosomal small subunit export from nucleus	BP
GO:0000082	G1/S transition of mitotic cell cycle	BP
GO:0000226	microtubule cytoskeleton organization	BP
GO:0000278	mitotic cell cycle	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006355	regulation of DNA-templated transcription	BP
GO:0006403	RNA localization	BP
GO:0006405	RNA export from nucleus	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006606	protein import into nucleus	BP
GO:0006611	protein export from nucleus	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006810	transport	BP
GO:0006886	intracellular protein transport	BP
GO:0006913	nucleocytoplasmic transport	BP
GO:0006996	organelle organization	BP
GO:0007010	cytoskeleton organization	BP
GO:0007017	microtubule-based process	BP
GO:0007049	cell cycle	BP
GO:0007051	spindle organization	BP
GO:0008104	protein localization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008536	small GTPase binding	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009889	regulation of biosynthetic process	BP
GO:0009987	cellular process	BP
GO:0010468	regulation of gene expression	BP
GO:0010556	regulation of macromolecule biosynthetic process	BP
GO:0015031	protein transport	BP
GO:0015833	peptide transport	BP
GO:0015931	nucleobase-containing compound transport	BP
GO:0016043	cellular component organization	BP
GO:0017016	small GTPase binding	MF
GO:0017038	protein import	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019899	enzyme binding	MF
GO:0019941	modification-dependent protein catabolic process	BP
GO:0022402	cell cycle process	BP
GO:0022613	ribonucleoprotein complex biogenesis	BP
GO:0030163	protein catabolic process	BP
GO:0031267	small GTPase binding	MF
GO:0031323	regulation of cellular metabolic process	BP
GO:0031326	regulation of cellular biosynthetic process	BP
GO:0031503	protein-containing complex localization	BP
GO:0031935	obsolete regulation of chromatin silencing	BP
GO:0031938	obsolete regulation of chromatin silencing at telomere	BP
GO:0033036	macromolecule localization	BP
GO:0033043	regulation of organelle organization	BP
GO:0033044	regulation of chromosome organization	BP
GO:0033365	protein localization to organelle	BP
GO:0033750	ribosome localization	BP
GO:0034504	protein localization to nucleus	BP
GO:0034613	protein localization	BP
GO:0042254	ribosome biogenesis	BP
GO:0042886	amide transport	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0044085	cellular component biogenesis	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044770	cell cycle phase transition	BP
GO:0044772	mitotic cell cycle phase transition	BP
GO:0044843	cell cycle G1/S phase transition	BP
GO:0045184	establishment of protein localization	BP
GO:0046907	intracellular transport	BP
GO:0050657	nucleic acid transport	BP
GO:0050658	RNA transport	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051020	GTPase binding	MF
GO:0051128	regulation of cellular component organization	BP
GO:0051168	nuclear export	BP
GO:0051169	nuclear transport	BP
GO:0051170	import into nucleus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0051236	establishment of RNA localization	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051640	organelle localization	BP
GO:0051641	cellular localization	BP
GO:0051649	establishment of localization in cell	BP
GO:0051656	establishment of organelle localization	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0060968	obsolete regulation of gene silencing	BP
GO:0065007	biological regulation	BP
GO:0070727	cellular macromolecule localization	BP
GO:0071166	ribonucleoprotein complex localization	BP
GO:0071426	obsolete ribonucleoprotein complex export from nucleus	BP
GO:0071428	obsolete rRNA-containing ribonucleoprotein complex export from nucleus	BP
GO:0071702	organic substance transport	BP
GO:0071704	organic substance metabolic process	BP
GO:0071705	nitrogen compound transport	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0072594	establishment of protein localization to organelle	BP
GO:0080090	regulation of primary metabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1902275	regulation of chromatin organization	BP
GO:1903047	mitotic cell cycle process	BP
GO:1903506	regulation of nucleic acid-templated transcription	BP
GO:2000112	regulation of cellular macromolecule biosynthetic process	BP
GO:2001141	regulation of RNA biosynthetic process	BP