Basic Information
Gene ID
Position
GWHASIS00001973:3116530-3121598 (-)
5068bp
Gene Type
gene
Gene Description (Protein Product)
ABC transporter transmembrane region
Organism
Also AS AT3G62700

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0021485 ABC transporter D family member 2
EVM0028802 Isocitrate dehydrogenase NADP
EVM0033962 Abscisic stress-ripening protein 3-like
Regulatory gene
EVM0000098 DnaJ homolog; subfamily C; member
EVM0000322 G-box-binding factor
EVM0000691 radialis-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map02010 ABC transporters The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).