Basic Information
Gene ID
Position
GWHASIS00000052:11851777-11855302 (+)
3525bp
Gene Type
gene
Gene Description (Protein Product)
splicing factor
Organism
Also AS AT3G13570

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0030579 RNA recognition motif
EVM0026920 serine arginine-rich splicing factor
EVM0022130 splicing factor
Regulatory gene
EVM0002600 AP2-like ethylene-responsive transcription factor
EVM0004602 AP2-like ethylene-responsive transcription factor
EVM0005243 AP2-like ethylene-responsive transcription factor

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.