PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	EVM0021170 View in Genome Browser
Position	GWHASIS00001978:43365889-43366242 (-) 353bp
Gene Type	gene
Gene Description (Protein Product)	RNA-directed DNA methylation 1
Organism	Acer catalpifolium
Also AS	AT3G22680

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

EVM0025941 Belongs to the argonaute family

EVM0025431 DNA-directed RNA polymerases II; IV and V subunit

EVM0032476 DNA-directed RNA polymerases I; II; and III subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000419	RNA polymerase V complex	CC
GO:0000428	DNA-directed RNA polymerase complex	CC
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006304	DNA modification	BP
GO:0006305	DNA alkylation	BP
GO:0006306	DNA methylation	BP
GO:0006396	RNA processing	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010467	gene expression	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010629	negative regulation of gene expression	BP
GO:0014070	response to organic cyclic compound	BP
GO:0016070	RNA metabolic process	BP
GO:0016458	obsolete gene silencing	BP
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0030880	RNA polymerase complex	CC
GO:0031047	RNA-mediated gene silencing	BP
GO:0031050	ncRNA processing	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0032259	methylation	BP
GO:0032991	protein-containing complex	CC
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0042221	response to chemical	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043331	response to dsRNA	BP
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0043621	protein self-association	MF
GO:0044030	regulation of DNA methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044728	obsolete DNA methylation or demethylation	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048519	negative regulation of biological process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051052	regulation of DNA metabolic process	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0055029	nuclear DNA-directed RNA polymerase complex	CC
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061695	transferase complex, transferring phosphorus-containing groups	CC
GO:0065007	biological regulation	BP
GO:0070887	cellular response to chemical stimulus	BP
GO:0070918	regulatory ncRNA processing	BP
GO:0071310	cellular response to organic substance	BP
GO:0071359	cellular response to dsRNA	BP
GO:0071407	cellular response to organic cyclic compound	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901698	response to nitrogen compound	BP
GO:1901699	cellular response to nitrogen compound	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC