PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Pathway

Basic Information

Gene ID	EVM0023685 View in Genome Browser
Position	GWHASIS00001973:54697931-54700975 (+) 3044bp
Gene Type	gene
Gene Description (Protein Product)	histone deacetylase
Organism	Acer catalpifolium
Also AS	AT5G03740

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

EVM0032185 DEK C terminal domain

EVM0024866 Mitotic checkpoint protein

EVM0027177 SWI SNF complex subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003002	regionalization	BP
GO:0003006	developmental process involved in reproduction	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004407	histone deacetylase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005730	nucleolus	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006476	protein deacetylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007275	multicellular organism development	BP
GO:0007389	pattern specification process	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009292	horizontal gene transfer	BP
GO:0009294	DNA-mediated transformation	BP
GO:0009791	post-embryonic development	BP
GO:0009798	axis specification	BP
GO:0009943	adaxial/abaxial axis specification	BP
GO:0009944	polarity specification of adaxial/abaxial axis	BP
GO:0009955	adaxial/abaxial pattern specification	BP
GO:0009987	cellular process	BP
GO:0010154	fruit development	BP
GO:0010162	seed dormancy process	BP
GO:0010431	seed maturation	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016575	histone deacetylation	BP
GO:0016787	hydrolase activity	MF
GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	MF
GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	MF
GO:0019213	deacetylase activity	MF
GO:0019538	protein metabolic process	BP
GO:0021700	developmental maturation	BP
GO:0022414	reproductive process	BP
GO:0022611	dormancy process	BP
GO:0022622	root system development	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032501	multicellular organismal process	BP
GO:0032502	developmental process	BP
GO:0032504	multicellular organism reproduction	BP
GO:0033558	protein lysine deacetylase activity	MF
GO:0035601	protein deacylation	BP
GO:0036211	protein modification process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043228	non-membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043232	intracellular non-membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044464	obsolete cell part	CC
GO:0044764	obsolete multi-organism cellular process	BP
GO:0048316	seed development	BP
GO:0048364	root development	BP
GO:0048608	reproductive structure development	BP
GO:0048609	multicellular organismal reproductive process	BP
GO:0048731	system development	BP
GO:0048856	anatomical structure development	BP
GO:0051276	chromosome organization	BP
GO:0051704	obsolete multi-organism process	BP
GO:0061458	reproductive system development	BP
GO:0065001	specification of axis polarity	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071695	anatomical structure maturation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0098732	macromolecule deacylation	BP
GO:0099402	plant organ development	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1901564	organonitrogen compound metabolic process	BP