PPGR - Gene Detail

Gene ID	EVM0027527 View in Genome Browser
Position	GWHASIS00000052:3962318-3967146 (-) 4828bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the OSBP family
Organism	Acer catalpifolium
Also AS	AT5G02100

upstream:

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Protein-protein interaction (PPI)	EVM0028768 Vesicle-associated protein EVM0031561 Domain of unknown function (DUF4228) EVM0030793 sirohydrochlorin ferrochelatase
Regulatory gene	EVM0000098 DnaJ homolog; subfamily C; member EVM0001315 transcription factor that promotes early floral meristem identity in synergy with APETALA1; FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1 EVM0001481 Transcription factor

Load All Networks

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0003674	molecular_function	MF
GO:0005488	binding	MF
GO:0005496	steroid binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005783	endoplasmic reticulum	CC
GO:0005829	cytosol	CC
GO:0008150	biological_process	BP
GO:0008289	lipid binding	MF
GO:0009566	fertilization	BP
GO:0009567	double fertilization forming a zygote and endosperm	BP
GO:0012505	endomembrane system	CC
GO:0019953	sexual reproduction	BP
GO:0022414	reproductive process	BP
GO:0032934	sterol binding	MF
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0044703	multi-organism reproductive process	BP
GO:0051704	obsolete multi-organism process	BP
GO:0097159	organic cyclic compound binding	MF

KEGG Term	Name	Description
map03015	mRNA surveillance pathway	The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.