PPGR - Gene Detail

Basic Information

Gene ID	EVM0027838 View in Genome Browser
Position	GWHASIS00000114:14325492-14333260 (+) 7768bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the adaptor complexes medium subunit family
Organism	Acer catalpifolium
Also AS	AT5G46630

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

EVM0033081 Belongs to the adaptor complexes small subunit family

EVM0032039 Part of the AP-3 complex; an adaptor-related complex which seems to be clathrin-associated. The complex is associated with the Golgi region as well as more peripheral structures. It facilitates the budding of vesicles from the Golgi membrane and may be directly involved in trafficking to the vacuole. It also function in maintaining the identity of lytic vacuoles and in regulating the transition between storage and lytic vacuoles

EVM0030642 Belongs to the syntaxin family

Regulatory gene

EVM0001315 transcription factor that promotes early floral meristem identity in synergy with APETALA1; FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1

EVM0002600 AP2-like ethylene-responsive transcription factor

EVM0003629 MADS-box protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005886	plasma membrane	CC
GO:0005905	clathrin-coated pit	CC
GO:0012505	endomembrane system	CC
GO:0012506	vesicle membrane	CC
GO:0016020	membrane	CC
GO:0030117	membrane coat	CC
GO:0030118	clathrin coat	CC
GO:0030119	AP-type membrane coat adaptor complex	CC
GO:0030120	vesicle coat	CC
GO:0030122	AP-2 adaptor complex	CC
GO:0030125	clathrin vesicle coat	CC
GO:0030128	clathrin coat of endocytic vesicle	CC
GO:0030131	clathrin adaptor complex	CC
GO:0030132	clathrin coat of coated pit	CC
GO:0030135	coated vesicle	CC
GO:0030136	clathrin-coated vesicle	CC
GO:0030139	endocytic vesicle	CC
GO:0030659	cytoplasmic vesicle membrane	CC
GO:0030662	coated vesicle membrane	CC
GO:0030665	clathrin-coated vesicle membrane	CC
GO:0030666	endocytic vesicle membrane	CC
GO:0030669	clathrin-coated endocytic vesicle membrane	CC
GO:0031090	organelle membrane	CC
GO:0031201	SNARE complex	CC
GO:0031410	cytoplasmic vesicle	CC
GO:0031982	vesicle	CC
GO:0032991	protein-containing complex	CC
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044425	obsolete membrane part	CC
GO:0044433	obsolete cytoplasmic vesicle part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044459	obsolete plasma membrane part	CC
GO:0044464	obsolete cell part	CC
GO:0045334	clathrin-coated endocytic vesicle	CC
GO:0048475	coated membrane	CC
GO:0071944	cell periphery	CC
GO:0097708	intracellular vesicle	CC
GO:0098588	bounding membrane of organelle	CC
GO:0098796	membrane protein complex	CC
GO:0098797	plasma membrane protein complex	CC
GO:0098805	membrane	CC

KEGG Term	Name	Description
map04144	Endocytosis	Endocytosis is a mechanism for cells to remove ligands, nutrients, and plasma membrane (PM) proteins, and lipids from the cell surface, bringing them into the cell interior. Transmembrane proteins entering through clathrin-dependent endocytosis (CDE) have sequences in their cytoplasmic domains that bind to the APs (adaptor-related protein complexes) and enable their rapid removal from the PM. In addition to APs and clathrin, there are numerous accessory proteins including dynamin. Depending on the various proteins that enter the endosome membrane, these cargoes are sorted to distinct destinations. Some cargoes, such as nutrient receptors, are recycled back to the PM. Ubiquitylated membrane proteins, such as activated growth-factor receptors, are sorted into intraluminal vesicles and eventually end up in the lysosome lumen via multivesicular endosomes (MVEs). There are distinct mechanisms of clathrin-independent endocytosis (CIE) depending upon the cargo and the cell type.