Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
EVM0031315
View in Genome Browser
Position
GWHASIS00000991:26813-42127 (-)
15314bp
Gene Type
gene
Gene Description (Protein Product)
ATP-dependent RNA helicase
Organism
Acer catalpifolium
Also AS AT5G04895

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0032855 Small RNA
EVM0034638 Belongs to the class-I aminoacyl-tRNA synthetase family
EVM0033927 DEAD-box ATP-dependent RNA helicase
Regulatory gene
EVM0001315 transcription factor that promotes early floral meristem identity in synergy with APETALA1; FRUITFULL and LEAFY. Is required subsequently for the transition of an inflorescence meristem into a floral meristem. Seems to be partially redundant to the function of APETALA1
EVM0003629 MADS-box protein
EVM0005245 MADS-box protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000976 transcription cis-regulatory region binding MF
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding MF
GO:0000987 cis-regulatory region sequence-specific DNA binding MF
GO:0001012 RNA polymerase II transcription regulatory region sequence-specific DNA binding MF
GO:0001047 core promoter sequence-specific DNA binding MF
GO:0001067 transcription regulatory region nucleic acid binding MF
GO:0001503 ossification BP
GO:0001817 regulation of cytokine production BP
GO:0001819 positive regulation of cytokine production BP
GO:0002151 G-quadruplex RNA binding MF
GO:0002791 regulation of peptide secretion BP
GO:0002793 positive regulation of peptide secretion BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003690 double-stranded DNA binding MF
GO:0003697 single-stranded DNA binding MF
GO:0003723 RNA binding MF
GO:0003724 RNA helicase activity MF
GO:0003725 double-stranded RNA binding MF
GO:0003824 catalytic activity MF
GO:0004004 RNA helicase activity MF
GO:0004386 helicase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005829 cytosol CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006355 regulation of DNA-templated transcription BP
GO:0006357 regulation of transcription by RNA polymerase II BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0008026 helicase activity MF
GO:0008094 ATP-dependent activity, acting on DNA MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008186 ATP-dependent activity, acting on RNA MF
GO:0009605 response to external stimulus BP
GO:0009607 response to biotic stimulus BP
GO:0009615 response to virus BP
GO:0009889 regulation of biosynthetic process BP
GO:0009891 positive regulation of biosynthetic process BP
GO:0009892 negative regulation of metabolic process BP
GO:0009893 positive regulation of metabolic process BP
GO:0009894 regulation of catabolic process BP
GO:0009895 negative regulation of catabolic process BP
GO:0009987 cellular process BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0010468 regulation of gene expression BP
GO:0010501 RNA secondary structure unwinding BP
GO:0010556 regulation of macromolecule biosynthetic process BP
GO:0010557 positive regulation of macromolecule biosynthetic process BP
GO:0010604 positive regulation of macromolecule metabolic process BP
GO:0010605 negative regulation of macromolecule metabolic process BP
GO:0010608 post-transcriptional regulation of gene expression BP
GO:0010628 positive regulation of gene expression BP
GO:0010638 positive regulation of organelle organization BP
GO:0014070 response to organic cyclic compound BP
GO:0016070 RNA metabolic process BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019219 regulation of nucleobase-containing compound metabolic process BP
GO:0019222 regulation of metabolic process BP
GO:0019899 enzyme binding MF
GO:0031323 regulation of cellular metabolic process BP
GO:0031324 negative regulation of cellular metabolic process BP
GO:0031325 positive regulation of cellular metabolic process BP
GO:0031326 regulation of cellular biosynthetic process BP
GO:0031328 positive regulation of cellular biosynthetic process BP
GO:0031329 regulation of cellular catabolic process BP
GO:0031330 negative regulation of cellular catabolic process BP
GO:0032204 regulation of telomere maintenance BP
GO:0032206 positive regulation of telomere maintenance BP
GO:0032479 regulation of type I interferon production BP
GO:0032481 positive regulation of type I interferon production BP
GO:0032501 multicellular organismal process BP
GO:0032647 regulation of interferon-alpha production BP
GO:0032727 positive regulation of interferon-alpha production BP
GO:0032879 regulation of localization BP
GO:0032880 regulation of protein localization BP
GO:0033043 regulation of organelle organization BP
GO:0033044 regulation of chromosome organization BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0042221 response to chemical BP
GO:0042623 ATP hydrolysis activity MF
GO:0042826 histone deacetylase binding MF
GO:0043170 macromolecule metabolic process BP
GO:0043207 response to external biotic stimulus BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043330 response to exogenous dsRNA BP
GO:0043331 response to dsRNA BP
GO:0043487 regulation of RNA stability BP
GO:0043489 RNA stabilization BP
GO:0043565 sequence-specific DNA binding MF
GO:0044212 transcription cis-regulatory region binding MF
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0045893 positive regulation of DNA-templated transcription BP
GO:0045934 negative regulation of nucleobase-containing compound metabolic process BP
GO:0045935 positive regulation of nucleobase-containing compound metabolic process BP
GO:0045944 positive regulation of transcription by RNA polymerase II BP
GO:0046483 heterocycle metabolic process BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0050707 regulation of cytokine production BP
GO:0050708 regulation of protein secretion BP
GO:0050714 positive regulation of protein secretion BP
GO:0050715 positive regulation of cytokine production BP
GO:0050789 regulation of biological process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051046 regulation of secretion BP
GO:0051047 positive regulation of secretion BP
GO:0051049 regulation of transport BP
GO:0051050 positive regulation of transport BP
GO:0051052 regulation of DNA metabolic process BP
GO:0051054 positive regulation of DNA metabolic process BP
GO:0051128 regulation of cellular component organization BP
GO:0051130 positive regulation of cellular component organization BP
GO:0051171 regulation of nitrogen compound metabolic process BP
GO:0051172 negative regulation of nitrogen compound metabolic process BP
GO:0051173 positive regulation of nitrogen compound metabolic process BP
GO:0051222 positive regulation of protein transport BP
GO:0051223 regulation of protein transport BP
GO:0051239 regulation of multicellular organismal process BP
GO:0051240 positive regulation of multicellular organismal process BP
GO:0051252 regulation of RNA metabolic process BP
GO:0051253 negative regulation of RNA metabolic process BP
GO:0051254 positive regulation of RNA metabolic process BP
GO:0051704 obsolete multi-organism process BP
GO:0051707 response to other organism BP
GO:0051880 G-quadruplex DNA binding MF
GO:0060255 regulation of macromolecule metabolic process BP
GO:0065007 biological regulation BP
GO:0065008 regulation of biological quality BP
GO:0070034 telomerase RNA binding MF
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070201 regulation of establishment of protein localization BP
GO:0071704 organic substance metabolic process BP
GO:0080090 regulation of primary metabolic process BP
GO:0090087 regulation of peptide transport BP
GO:0090304 nucleic acid metabolic process BP
GO:0090669 telomerase RNA stabilization BP
GO:0097159 organic cyclic compound binding MF
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1901698 response to nitrogen compound BP
GO:1902369 negative regulation of RNA catabolic process BP
GO:1902680 positive regulation of RNA biosynthetic process BP
GO:1902739 regulation of interferon-alpha production BP
GO:1902741 positive regulation of interferon-alpha production BP
GO:1903506 regulation of nucleic acid-templated transcription BP
GO:1903508 positive regulation of nucleic acid-templated transcription BP
GO:1903530 regulation of secretion by cell BP
GO:1903532 positive regulation of secretion by cell BP
GO:1904951 positive regulation of establishment of protein localization BP
GO:1990837 sequence-specific double-stranded DNA binding MF
GO:2000112 regulation of cellular macromolecule biosynthetic process BP
GO:2001141 regulation of RNA biosynthetic process BP
GO:2001252 positive regulation of chromosome organization BP
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.