Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
EVM0031902
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Position
GWHASIS00001740:223541-226209 (+)
2668bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein
Organism
Acer catalpifolium
Also AS AT3G62840

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0033737 U6 snRNA-associated Sm-like protein
EVM0032609 U4 U6 small nuclear ribonucleoprotein PRP4-like protein
EVM0034302 U5 small nuclear ribonucleoprotein 40 kDa
Regulatory gene
EVM0000098 DnaJ homolog; subfamily C; member
EVM0001481 Transcription factor
EVM0002186 Squamosa promoter-binding-like protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.