Basic Information
Gene ID
Position
GWHASIS00000030:43351133-43351735 (-)
602bp
Gene Type
gene
Gene Description (Protein Product)
Splicing factor 3B subunit
Organism
Also AS AT5G64270

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
EVM0035127 THO complex subunit
EVM0035280 Proton-conducting membrane transporter
EVM0034877 Suppressor of mec-8 and unc-52 protein homolog
Regulatory gene
EVM0000691 radialis-like
EVM0004634 Telomere repeat-binding protein
EVM0005196 DNA methyltransferase 1-associated protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.