Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
ACNE_00159.g
View in Genome Browser
Position
acne_003:12786387-12786761 (+)
374bp
Gene Type
gene
Gene Description (Protein Product)
"RNA recognition motif. (a.k.a. RRM
Organism
Acer negundo
Also AS AT5G12190

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
ACNE_26716.g splicing factor 3A subunit
ACNE_14104.g splicing factor 3A subunit
ACNE_18721.g small nuclear ribonucleoprotein G
Regulatory gene
ACNE_00091.g Belongs to the GRAS family
ACNE_00566.g Protein SENSITIVE TO PROTON RHIZOTOXICITY
ACNE_00599.g Belongs to the GRAS family

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.