Basic Information
Gene ID
Position
acne_004:12840046-12844485 (-)
4439bp
Gene Type
gene
Gene Description (Protein Product)
CDK-activating kinase assembly factor MAT1
Organism
Also AS AT4G30820

Gene Structure

upstream:

Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
ACNE_28565.g DNA repair helicase
ACNE_21134.g Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA
ACNE_27416.g Transcription initiation factor IIF subunit
Regulatory gene
ACNE_00566.g Protein SENSITIVE TO PROTON RHIZOTOXICITY
ACNE_00864.g radialis-like
ACNE_01136.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Term Name Description
map03420 Nucleotide excision repair Nucleotide excision repair (NER) is a mechanism to recognize and repair bulky DNA damage caused by compounds, environmental carcinogens, and exposure to UV-light. In humans hereditary defects in the NER pathway are linked to at least three diseases: xeroderma pigmentosum (XP), Cockayne syndrome (CS), and trichothiodystrophy (TTD). The repair of damaged DNA involves at least 30 polypeptides within two different sub-pathways of NER known as transcription-coupled repair (TCR-NER) and global genome repair (GGR-NER). TCR refers to the expedited repair of lesions located in the actively transcribed strand of genes by RNA polymerase II (RNAP II). In GGR-NER the first step of damage recognition involves XPC-hHR23B complex together with XPE complex (in prokaryotes, uvrAB complex). The following steps of GGR-NER and TCR-NER are similar.
map03022 Basal transcription factors -