Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
ACNE_22614.g
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Position
acne_004:21286253-21291641 (-)
5388bp
Gene Type
gene
Gene Description (Protein Product)
Small nuclear ribonucleoprotein
Organism
Acer negundo
Also AS AT4G30330

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
ACNE_27078.g serine arginine-rich splicing factor
ACNE_22785.g U2 small nuclear ribonucleoprotein
ACNE_26716.g splicing factor 3A subunit
Regulatory gene
ACNE_08995.g Protein BASIC PENTACYSTEINE4-like
ACNE_11426.g Protein BASIC PENTACYSTEINE6-like
ACNE_19841.g Protein BASIC PENTACYSTEINE2-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.