Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
ACNE_29889.g
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Position
acne_100:40988927-40993850 (+)
4923bp
Gene Type
gene
Gene Description (Protein Product)
pre-mRNA-splicing factor
Organism
Acer negundo
Also AS AT1G09140

Gene Structure

upstream:
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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
ACNE_29906.g Transcription initiation factor IIF subunit
ACNE_30096.g phosphatase 2C
ACNE_30181.g Cleavage inducing molecular chaperone
Regulatory gene
ACNE_00802.g Zinc-finger homeodomain protein
ACNE_00864.g radialis-like
ACNE_01136.g dof zinc finger protein

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.