PPGR - Gene Detail

Basic Information

Gene ID	gene-Apse001G0002700 View in Genome Browser
Position	GWHBECT00000001:177237-182139 (-) 4902bp
Gene Type	gene
Gene Description (Protein Product)	ABC transporter B family member
Organism	Acer pseudosieboldianum
Also AS	AT2G47000

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-Apse007G0119100 Ubiquitin family

gene-Apse007G0117600 Ubiquitin exists either covalently attached to another protein; or free (unanchored). When covalently bound; it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin); a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains; when attached to a target protein; have different functions depending on the Lys residue of the ubiquitin that is linked

gene-Apse003G0217800 Ubiquitin-like domain

Regulatory gene

gene-Apse001G0228600 NAC domain-containing protein

gene-Apse001G0231200 NAC domain-containing protein

gene-Apse001G0263900 NAC domain-containing protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0003674	molecular_function	MF
GO:0005215	transporter activity	MF
GO:0005575	cellular_component	CC
GO:0005623	obsolete cell	CC
GO:0005886	plasma membrane	CC
GO:0005911	cell-cell junction	CC
GO:0006810	transport	BP
GO:0008150	biological_process	BP
GO:0009506	plasmodesma	CC
GO:0009914	hormone transport	BP
GO:0009926	auxin polar transport	BP
GO:0009966	regulation of signal transduction	BP
GO:0010315	auxin export across the plasma membrane	BP
GO:0010329	auxin efflux transmembrane transporter activity	MF
GO:0010540	basipetal auxin transport	BP
GO:0010646	regulation of cell communication	BP
GO:0010817	regulation of hormone levels	BP
GO:0010928	regulation of auxin mediated signaling pathway	BP
GO:0015562	efflux transmembrane transporter activity	MF
GO:0016020	membrane	CC
GO:0022857	transmembrane transporter activity	MF
GO:0023051	regulation of signaling	BP
GO:0030054	cell junction	CC
GO:0044464	obsolete cell part	CC
GO:0048583	regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051179	localization	BP
GO:0051234	establishment of localization	BP
GO:0055044	symplast	CC
GO:0055085	transmembrane transport	BP
GO:0060918	auxin transport	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0071944	cell periphery	CC
GO:0080161	auxin transmembrane transporter activity	MF

KEGG Term	Name	Description
map02010	ABC transporters	The ATP-binding cassette (ABC) transporters form one of the largest known protein families, and are widespread in bacteria, archaea, and eukaryotes. They couple ATP hydrolysis to active transport of a wide variety of substrates such as ions, sugars, lipids, sterols, peptides, proteins, and drugs. The structure of a prokaryotic ABC transporter usually consists of three components; typically two integral membrane proteins each having six transmembrane segments, two peripheral proteins that bind and hydrolyze ATP, and a periplasmic (or lipoprotein) substrate-binding protein. Many of the genes for the three components form operons as in fact observed in many bacterial and archaeal genomes. On the other hand, in a typical eukaryotic ABC transporter, the membrane spanning protein and the ATP-binding protein are fused, forming a multi-domain protein with the membrane-spanning domain (MSD) and the nucleotide-binding domain (NBD).