PPGR - Gene Detail

Basic Information

Gene ID	gene-Apse006G0041900 View in Genome Browser
Position	GWHBECT00000006:5867255-5872359 (+) 5104bp
Gene Type	gene
Gene Description (Protein Product)	U2 snRNP auxiliary factor large subunit
Organism	Acer pseudosieboldianum
Also AS	AT4G36690

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-Apse010G0002900 contain most of the conserved domains of hsU2AF35; including the psiRRM; one RS domain; two zinc fingers; and the two regions for interacting with U2AF large subunit. Both proteins lack the stretch of glycines present in human U2AF35. The sequences are overall 83 identical; and each Arabidopsis homolog shows approximately 70 similarity to hsU2AF35. U2AF(35) homologs were also identified from maize; rice and other plants with large-scale EST projects. Both genes are expressed in all major tissues; with atU2AF(35)a expressed at a higher level than atU2AF(35)b in most tissues. The expression patterns were different in roots atU2AF(35)b expressed strongly in whole young roots and root tips and atU2AF(35)a limited to root vascular regions

gene-Apse007G0096200 Splicing factor U2af small subunit

gene-Apse006G0043200 U1 small nuclear ribonucleoprotein 70

Regulatory gene

gene-Apse002G0042400 dof zinc finger protein

gene-Apse002G0079800 Transcription factor

gene-Apse002G0239200 -

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

KEGG Term	Name	Description
map03040	Spliceosome	After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.