PPGR - Gene Detail

Basic Information

Gene ID	gene-Apse009G0126900 View in Genome Browser
Position	GWHBECT00000009:34432943-34437389 (+) 4446bp
Gene Type	gene
Gene Description (Protein Product)	WD repeat-containing protein
Organism	Acer pseudosieboldianum
Also AS	AT5G14530

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-Apse012G0086800 Retinoblastoma-binding protein

gene-Apse013G0152000 Retinoblastoma-binding protein

gene-Apse_Un070G0001500 Serine threonine-protein phosphatase

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000151	ubiquitin ligase complex	CC
GO:0003674	molecular_function	MF
GO:0003682	chromatin binding	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0006325	chromatin organization	BP
GO:0006464	protein modification process	BP
GO:0006479	protein methylation	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008213	protein alkylation	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016569	obsolete covalent chromatin modification	BP
GO:0016570	histone modification	BP
GO:0016571	histone methylation	BP
GO:0018022	peptidyl-lysine methylation	BP
GO:0018023	peptidyl-lysine trimethylation	BP
GO:0018193	peptidyl-amino acid modification	BP
GO:0018205	peptidyl-lysine modification	BP
GO:0019538	protein metabolic process	BP
GO:0031461	cullin-RING ubiquitin ligase complex	CC
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032259	methylation	BP
GO:0032991	protein-containing complex	CC
GO:0034708	methyltransferase complex	CC
GO:0034968	histone lysine methylation	BP
GO:0035097	histone methyltransferase complex	CC
GO:0036211	protein modification process	BP
GO:0040034	regulation of development, heterochronic	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0048188	Set1C/COMPASS complex	CC
GO:0048506	regulation of timing of meristematic phase transition	BP
GO:0048509	regulation of meristem development	BP
GO:0048510	regulation of timing of transition from vegetative to reproductive phase	BP
GO:0048580	regulation of post-embryonic development	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048586	regulation of long-day photoperiodism, flowering	BP
GO:0050789	regulation of biological process	BP
GO:0050793	regulation of developmental process	BP
GO:0051239	regulation of multicellular organismal process	BP
GO:0051276	chromosome organization	BP
GO:0051568	histone H3-K4 methylation	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0080008	Cul4-RING E3 ubiquitin ligase complex	CC
GO:0080182	histone H3-K4 trimethylation	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1902494	catalytic complex	CC
GO:1990234	transferase complex	CC
GO:2000026	regulation of multicellular organismal development	BP
GO:2000028	regulation of photoperiodism, flowering	BP
GO:2000241	regulation of reproductive process	BP

KEGG Term	Name	Description
map03015	mRNA surveillance pathway	The mRNA surveillance pathway is a quality control mechanism that detects and degrades abnormal mRNAs. These pathways include nonsense-mediated mRNA decay (NMD), nonstop mRNA decay (NSD), and no-go decay (NGD). NMD is a mechanism that eliminates mRNAs containing premature translation-termination codons (PTCs). In vertebrates, PTCs trigger efficient NMD when located upstream of an exon junction complex (EJC). Upf3, together with Upf1 and Upf2, may signal the presence of the PTC to the 5'end of the transcript, resulting in decapping and rapid exonucleolytic digestion of the mRNA. In the NSD pathway, which targets mRNAs lacking termination codons, the ribosome is believed to translate through the 3' untranslated region and stall at the end of the poly(A) tail. NSD involves an eRF3-like protein, Ski7p, which is hypothesized to bind the empty A site of the ribosome and recruit the exosome to degrade the mRNA from the 3' end. NGD targets mRNAs with stalls in translation elongation for endonucleolytic cleavage in a process involving the Dom34 and Hbs1 proteins.