PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	ACSA_12642.g View in Genome Browser
Position	acsa_001:4358141-4360951 (+) 2810bp
Gene Type	gene
Gene Description (Protein Product)	RING finger and CHY zinc finger domain-containing protein
Organism	Acer saccharum
Also AS	AT5G18650

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)	ACSA_37429.g RING finger and CHY zinc finger domain-containing protein ACSA_32253.g RING finger and CHY zinc finger domain-containing protein ACSA_24676.g RING finger and CHY zinc finger domain-containing protein
Regulatory gene	ACSA_02340.g dof zinc finger protein ACSA_08378.g dof zinc finger protein ACSA_08430.g dof zinc finger protein

Load All Networks

Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000151	ubiquitin ligase complex	CC
GO:0000731	DNA synthesis involved in DNA repair	BP
GO:0002039	p53 binding	MF
GO:0002831	regulation of response to biotic stimulus	BP
GO:0002832	negative regulation of response to biotic stimulus	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0004842	ubiquitin-protein transferase activity	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0005829	cytosol	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006281	DNA repair	BP
GO:0006301	postreplication repair	BP
GO:0006464	protein modification process	BP
GO:0006508	proteolysis	BP
GO:0006511	ubiquitin-dependent protein catabolic process	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006950	response to stress	BP
GO:0006974	cellular response to DNA damage stimulus	BP
GO:0008134	transcription factor binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008270	zinc ion binding	MF
GO:0009056	catabolic process	BP
GO:0009057	macromolecule catabolic process	BP
GO:0009058	biosynthetic process	BP
GO:0009059	macromolecule biosynthetic process	BP
GO:0009893	positive regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009896	positive regulation of catabolic process	BP
GO:0009987	cellular process	BP
GO:0010604	positive regulation of macromolecule metabolic process	BP
GO:0016567	protein ubiquitination	BP
GO:0016604	nuclear body	CC
GO:0016607	nuclear speck	CC
GO:0016740	transferase activity	MF
GO:0018130	heterocycle biosynthetic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019438	aromatic compound biosynthetic process	BP
GO:0019538	protein metabolic process	BP
GO:0019787	ubiquitin-like protein transferase activity	MF
GO:0019941	modification-dependent protein catabolic process	BP
GO:0019985	translesion synthesis	BP
GO:0030162	regulation of proteolysis	BP
GO:0030163	protein catabolic process	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031325	positive regulation of cellular metabolic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031331	positive regulation of cellular catabolic process	BP
GO:0031347	regulation of defense response	BP
GO:0031348	negative regulation of defense response	BP
GO:0031396	regulation of protein ubiquitination	BP
GO:0031398	positive regulation of protein ubiquitination	BP
GO:0031399	regulation of protein modification process	BP
GO:0031401	positive regulation of protein modification process	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032101	regulation of response to external stimulus	BP
GO:0032102	negative regulation of response to external stimulus	BP
GO:0032268	regulation of protein metabolic process	BP
GO:0032270	positive regulation of protein metabolic process	BP
GO:0032434	regulation of proteasomal ubiquitin-dependent protein catabolic process	BP
GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	BP
GO:0032446	protein modification by small protein conjugation	BP
GO:0032991	protein-containing complex	CC
GO:0033554	cellular response to stress	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034645	cellular macromolecule biosynthetic process	BP
GO:0034654	nucleobase-containing compound biosynthetic process	BP
GO:0036211	protein modification process	BP
GO:0042176	regulation of protein catabolic process	BP
GO:0042802	identical protein binding	MF
GO:0042803	protein homodimerization activity	MF
GO:0043167	ion binding	MF
GO:0043169	cation binding	MF
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043632	modification-dependent macromolecule catabolic process	BP
GO:0043900	obsolete regulation of multi-organism process	BP
GO:0043901	obsolete negative regulation of multi-organism process	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044248	cellular catabolic process	BP
GO:0044249	cellular biosynthetic process	BP
GO:0044257	protein catabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044265	cellular macromolecule catabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044271	cellular nitrogen compound biosynthetic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0045732	positive regulation of protein catabolic process	BP
GO:0045862	positive regulation of proteolysis	BP
GO:0046483	heterocycle metabolic process	BP
GO:0046872	metal ion binding	MF
GO:0046914	transition metal ion binding	MF
GO:0046983	protein dimerization activity	MF
GO:0048518	positive regulation of biological process	BP
GO:0048519	negative regulation of biological process	BP
GO:0048522	positive regulation of cellular process	BP
GO:0048583	regulation of response to stimulus	BP
GO:0048585	negative regulation of response to stimulus	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051173	positive regulation of nitrogen compound metabolic process	BP
GO:0051246	regulation of protein metabolic process	BP
GO:0051247	positive regulation of protein metabolic process	BP
GO:0051603	proteolysis involved in protein catabolic process	BP
GO:0051716	cellular response to stimulus	BP
GO:0051865	protein autoubiquitination	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061136	regulation of proteasomal protein catabolic process	BP
GO:0065007	biological regulation	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070647	protein modification by small protein conjugation or removal	BP
GO:0070987	error-free translesion synthesis	BP
GO:0071704	organic substance metabolic process	BP
GO:0071897	DNA biosynthetic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0080134	regulation of response to stress	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0140096	catalytic activity, acting on a protein	MF
GO:1900424	regulation of defense response to bacterium	BP
GO:1900425	negative regulation of defense response to bacterium	BP
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901362	organic cyclic compound biosynthetic process	BP
GO:1901483	regulation of transcription factor catabolic process	BP
GO:1901485	positive regulation of transcription factor catabolic process	BP
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901565	organonitrogen compound catabolic process	BP
GO:1901575	organic substance catabolic process	BP
GO:1901576	organic substance biosynthetic process	BP
GO:1901800	positive regulation of proteasomal protein catabolic process	BP
GO:1902494	catalytic complex	CC
GO:1903050	regulation of proteolysis involved in protein catabolic process	BP
GO:1903052	positive regulation of proteolysis involved in protein catabolic process	BP
GO:1903320	regulation of protein modification by small protein conjugation or removal	BP
GO:1903322	positive regulation of protein modification by small protein conjugation or removal	BP
GO:1903362	regulation of protein catabolic process	BP
GO:1903364	positive regulation of protein catabolic process	BP
GO:1990234	transferase complex	CC
GO:2000058	regulation of ubiquitin-dependent protein catabolic process	BP
GO:2000060	positive regulation of ubiquitin-dependent protein catabolic process	BP

KEGG Term	Name	Description
map04120	Ubiquitin mediated proteolysis	Protein ubiquitination plays an important role in eukaryotic cellular processes. It mainly functions as a signal for 26S proteasome dependent protein degradation. The addition of ubiquitin to proteins being degraded is performed by a reaction cascade consisting of three enzymes, named E1 (ubiquitin activating enzyme), E2 (ubiquitin conjugating enzyme), and E3 (ubiquitin ligase). Each E3 has specificity to its substrate, or proteins to be targeted by ubiquitination. Many E3s are discovered in eukaryotes and they are classified into four types: HECT type, U-box type, single RING-finger type, and multi-subunit RING-finger type. Multi-subunit RING-finger E3s are exemplified by cullin-Rbx E3s and APC/C. They consist of a RING-finger-containing subunit (RBX1 or RBX2) that functions to bind E2s, a scaffold-like cullin molecule, adaptor proteins, and a target recognizing subunit that binds substrates.