PPGR - Gene Detail

Basic Information

Gene ID	ACSA_34347.g View in Genome Browser
Position	acsa_387:839392-845880 (+) 6488bp
Gene Type	gene
Gene Description (Protein Product)	Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks
Organism	Acer saccharum
Also AS	AT3G23890

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

ACSA_36456.g Binds to single and double-stranded DNA and exhibits DNA-dependent ATPase activity. Unwinds duplex DNA. Component of the meiotic recombination pathway. Seems to play a role in mediating chromosome homology search, chromosome pairing and synapsis at early stages and probably chromosome crossing-over at later stages in meiosis. Probably is involved in the repair of meiotic double strand breaks (DBSs) and in homologous recombination

ACSA_38308.g Patellin-4-like

ACSA_37586.g Condensin-2 complex subunit

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000003	reproduction	BP
GO:0000075	cell cycle checkpoint signaling	BP
GO:0000278	mitotic cell cycle	BP
GO:0000280	nuclear division	BP
GO:0000712	resolution of meiotic recombination intermediates	BP
GO:0000819	sister chromatid segregation	BP
GO:0003674	molecular_function	MF
GO:0003824	catalytic activity	MF
GO:0003916	DNA topoisomerase activity	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006259	DNA metabolic process	BP
GO:0006310	DNA recombination	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0006996	organelle organization	BP
GO:0007049	cell cycle	BP
GO:0007059	chromosome segregation	BP
GO:0007093	mitotic cell cycle checkpoint signaling	BP
GO:0007127	meiosis I	BP
GO:0007131	reciprocal meiotic recombination	BP
GO:0007346	regulation of mitotic cell cycle	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009987	cellular process	BP
GO:0016043	cellular component organization	BP
GO:0016853	isomerase activity	MF
GO:0022402	cell cycle process	BP
GO:0022414	reproductive process	BP
GO:0031570	DNA integrity checkpoint signaling	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0035825	homologous recombination	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0044774	mitotic DNA integrity checkpoint signaling	BP
GO:0045132	meiotic chromosome segregation	BP
GO:0045786	negative regulation of cell cycle	BP
GO:0045930	negative regulation of mitotic cell cycle	BP
GO:0046483	heterocycle metabolic process	BP
GO:0048285	organelle fission	BP
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050789	regulation of biological process	BP
GO:0050794	regulation of cellular process	BP
GO:0051276	chromosome organization	BP
GO:0051304	chromosome separation	BP
GO:0051307	meiotic chromosome separation	BP
GO:0051321	meiotic cell cycle	BP
GO:0051726	regulation of cell cycle	BP
GO:0061982	meiosis I cell cycle process	BP
GO:0065007	biological regulation	BP
GO:0071704	organic substance metabolic process	BP
GO:0071840	cellular component organization or biogenesis	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0098813	nuclear chromosome segregation	BP
GO:0140013	meiotic nuclear division	BP
GO:0140097	catalytic activity, acting on DNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1903046	meiotic cell cycle process	BP
GO:1903047	mitotic cell cycle process	BP