PPGR - Gene Detail

Basic Information

Gene Structure

Domain

Regulation&
Interaction

Annotation

Orthologus Group

Expresssion

Pathway

Basic Information

Gene ID	ACSA_38219.g View in Genome Browser
Position	acsa_387:541164-546959 (-) 5795bp
Gene Type	gene
Gene Description (Protein Product)	RNA binding (RRM RBD RNP motifs) family protein
Organism	Acer saccharum
Also AS	AT3G12640

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Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

ACSA_39268.g Protein TRANSPARENT TESTA

ACSA_39631.g eukaryotic translation initiation factor

ACSA_39303.g RING-box protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0000165	MAPK cascade	BP
GO:0002237	response to molecule of bacterial origin	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003727	single-stranded RNA binding	MF
GO:0005488	binding	MF
GO:0005515	protein binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005634	nucleus	CC
GO:0005654	nucleoplasm	CC
GO:0005737	cytoplasm	CC
GO:0006464	protein modification process	BP
GO:0006468	protein phosphorylation	BP
GO:0006793	phosphorus metabolic process	BP
GO:0006796	phosphate-containing compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0007154	cell communication	BP
GO:0007165	signal transduction	BP
GO:0008143	poly(A) binding	MF
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0009605	response to external stimulus	BP
GO:0009607	response to biotic stimulus	BP
GO:0009617	response to bacterium	BP
GO:0009892	negative regulation of metabolic process	BP
GO:0009894	regulation of catabolic process	BP
GO:0009987	cellular process	BP
GO:0010033	response to organic substance	BP
GO:0010468	regulation of gene expression	BP
GO:0010605	negative regulation of macromolecule metabolic process	BP
GO:0010608	post-transcriptional regulation of gene expression	BP
GO:0010629	negative regulation of gene expression	BP
GO:0016234	inclusion body	CC
GO:0016310	phosphorylation	BP
GO:0016604	nuclear body	CC
GO:0016607	nuclear speck	CC
GO:0019219	regulation of nucleobase-containing compound metabolic process	BP
GO:0019222	regulation of metabolic process	BP
GO:0019538	protein metabolic process	BP
GO:0019899	enzyme binding	MF
GO:0023014	signal transduction	BP
GO:0023052	signaling	BP
GO:0031323	regulation of cellular metabolic process	BP
GO:0031324	negative regulation of cellular metabolic process	BP
GO:0031329	regulation of cellular catabolic process	BP
GO:0031440	regulation of mRNA 3'-end processing	BP
GO:0031441	negative regulation of mRNA 3'-end processing	BP
GO:0031974	membrane-enclosed lumen	CC
GO:0031981	nuclear lumen	CC
GO:0032496	response to lipopolysaccharide	BP
GO:0032991	protein-containing complex	CC
GO:0033993	response to lipid	BP
GO:0035556	intracellular signal transduction	BP
GO:0036211	protein modification process	BP
GO:0042221	response to chemical	BP
GO:0042405	nuclear inclusion body	CC
GO:0043085	positive regulation of catalytic activity	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043207	response to external biotic stimulus	BP
GO:0043226	organelle	CC
GO:0043227	membrane-bounded organelle	CC
GO:0043229	intracellular organelle	CC
GO:0043231	intracellular membrane-bounded organelle	CC
GO:0043233	organelle lumen	CC
GO:0043412	macromolecule modification	BP
GO:0043487	regulation of RNA stability	BP
GO:0043488	regulation of mRNA stability	BP
GO:0043621	protein self-association	MF
GO:0044093	positive regulation of molecular function	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044267	protein metabolic process	BP
GO:0044422	obsolete organelle part	CC
GO:0044424	obsolete intracellular part	CC
GO:0044428	obsolete nuclear part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044446	obsolete intracellular organelle part	CC
GO:0044451	obsolete nucleoplasm part	CC
GO:0044464	obsolete cell part	CC
GO:0045934	negative regulation of nucleobase-containing compound metabolic process	BP
GO:0048471	perinuclear region of cytoplasm	CC
GO:0048519	negative regulation of biological process	BP
GO:0048523	negative regulation of cellular process	BP
GO:0050684	regulation of mRNA processing	BP
GO:0050686	negative regulation of mRNA processing	BP
GO:0050789	regulation of biological process	BP
GO:0050790	regulation of catalytic activity	BP
GO:0050794	regulation of cellular process	BP
GO:0050896	response to stimulus	BP
GO:0051171	regulation of nitrogen compound metabolic process	BP
GO:0051172	negative regulation of nitrogen compound metabolic process	BP
GO:0051252	regulation of RNA metabolic process	BP
GO:0051253	negative regulation of RNA metabolic process	BP
GO:0051338	regulation of transferase activity	BP
GO:0051347	positive regulation of transferase activity	BP
GO:0051704	obsolete multi-organism process	BP
GO:0051707	response to other organism	BP
GO:0051716	cellular response to stimulus	BP
GO:0060255	regulation of macromolecule metabolic process	BP
GO:0061013	regulation of mRNA catabolic process	BP
GO:0065007	biological regulation	BP
GO:0065008	regulation of biological quality	BP
GO:0065009	regulation of molecular function	BP
GO:0070013	intracellular organelle lumen	CC
GO:0070063	RNA polymerase binding	MF
GO:0070717	poly-purine tract binding	MF
GO:0070887	cellular response to chemical stimulus	BP
GO:0071216	cellular response to biotic stimulus	BP
GO:0071219	cellular response to molecule of bacterial origin	BP
GO:0071222	cellular response to lipopolysaccharide	BP
GO:0071310	cellular response to organic substance	BP
GO:0071396	cellular response to lipid	BP
GO:0071704	organic substance metabolic process	BP
GO:0080090	regulation of primary metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:1900363	regulation of mRNA polyadenylation	BP
GO:1900364	negative regulation of mRNA polyadenylation	BP
GO:1901363	heterocyclic compound binding	MF
GO:1901564	organonitrogen compound metabolic process	BP
GO:1901700	response to oxygen-containing compound	BP
GO:1901701	cellular response to oxygen-containing compound	BP
GO:1903311	regulation of mRNA metabolic process	BP
GO:1903312	negative regulation of mRNA metabolic process	BP
GO:1904245	regulation of polynucleotide adenylyltransferase activity	BP
GO:1904247	positive regulation of polynucleotide adenylyltransferase activity	BP
GO:1990904	ribonucleoprotein complex	CC