Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Atru.chr3.768.g
View in Genome Browser
Position
chr3:8087354-8088070 (+)
716bp
Gene Type
gene
Gene Description (Protein Product)
Pre-mRNA-splicing factor ATP-dependent RNA
Organism
Acer truncatum
Also AS AT3G26560

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Atru.chr5.1554.g histone acetyl-transferase
Atru.chr4.1923.g U-box domain-containing protein
Atru.chr4.2874.g Protein pleiotropic regulatory locus
Regulatory gene
Atru.chr11.999.g Protein BASIC PENTACYSTEINE2-like
Atru.chr13.337.g Protein BASIC PENTACYSTEINE6-like
Atru.chr5.3160.g Protein BASIC PENTACYSTEINE4-like

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
KEGG Pathway
KEGG Term Name Description
map03040 Spliceosome After transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, the spliceosome. The standard spliceosome is made up of five small nuclear ribonucleoproteins (snRNPs), U1, U2, U4, U5, and U6 snRNPs, and several spliceosome-associated proteins (SAPs). Spliceosomes are not a simple stable complex, but a dynamic family of particles that assemble on the mRNA precursor and help fold it into a conformation that allows transesterification to proceed. Various spliceosome forms (e.g. A-, B- and C-complexes) have been identified.