Basic Information
Gene Structure
Domain
Regulation&
Interaction
Annotation
Orthologus Group
Pathway
Basic Information
Gene ID
Atru.chr6.2018.g
View in Genome Browser
Position
chr6:31106022-31120736 (+)
14714bp
Gene Type
gene
Gene Description (Protein Product)
ATP-dependent RNA helicase
Organism
Acer truncatum
Also AS AT2G30800

Gene Structure

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Domain
Database EntryID E-Value Start end InterPro ID Description

Regulation&Interaction
Protein-protein interaction (PPI)
Atru.chr8.1339.g ATP-dependent RNA helicase
Atru.chr9.935.g ATP-dependent RNA helicase
Atru.chr9.934.g ATP-dependent RNA helicase

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Annotation

Orthologous Group
Orthologous ID Species Number All hits in PereRegDB Hits of this species Orthologous Detail


Pathway
Go Pathway KEGG Pathway
GO Term Description GO Category
GO:0000003 reproduction BP
GO:0003006 developmental process involved in reproduction BP
GO:0003674 molecular_function MF
GO:0003676 nucleic acid binding MF
GO:0003677 DNA binding MF
GO:0003678 DNA helicase activity MF
GO:0003723 RNA binding MF
GO:0003724 RNA helicase activity MF
GO:0003824 catalytic activity MF
GO:0004004 RNA helicase activity MF
GO:0004386 helicase activity MF
GO:0005488 binding MF
GO:0005515 protein binding MF
GO:0005575 cellular_component CC
GO:0005622 intracellular anatomical structure CC
GO:0005623 obsolete cell CC
GO:0005634 nucleus CC
GO:0005737 cytoplasm CC
GO:0005783 endoplasmic reticulum CC
GO:0006139 nucleobase-containing compound metabolic process BP
GO:0006259 DNA metabolic process BP
GO:0006396 RNA processing BP
GO:0006725 cellular aromatic compound metabolic process BP
GO:0006807 nitrogen compound metabolic process BP
GO:0006996 organelle organization BP
GO:0007049 cell cycle BP
GO:0007276 gamete generation BP
GO:0007281 germ cell development BP
GO:0007283 spermatogenesis BP
GO:0007286 spermatid development BP
GO:0007292 female gamete generation BP
GO:0007346 regulation of mitotic cell cycle BP
GO:0008026 helicase activity MF
GO:0008150 biological_process BP
GO:0008152 metabolic process BP
GO:0008186 ATP-dependent activity, acting on RNA MF
GO:0009987 cellular process BP
GO:0009994 oocyte differentiation BP
GO:0010033 response to organic substance BP
GO:0010467 gene expression BP
GO:0012505 endomembrane system CC
GO:0016043 cellular component organization BP
GO:0016070 RNA metabolic process BP
GO:0016462 pyrophosphatase activity MF
GO:0016787 hydrolase activity MF
GO:0016817 hydrolase activity, acting on acid anhydrides MF
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides MF
GO:0016887 ATP hydrolysis activity MF
GO:0017111 ribonucleoside triphosphate phosphatase activity MF
GO:0019899 enzyme binding MF
GO:0019953 sexual reproduction BP
GO:0022402 cell cycle process BP
GO:0022412 cellular process involved in reproduction in multicellular organism BP
GO:0022414 reproductive process BP
GO:0030154 cell differentiation BP
GO:0032392 DNA geometric change BP
GO:0032501 multicellular organismal process BP
GO:0032502 developmental process BP
GO:0032504 multicellular organism reproduction BP
GO:0032508 DNA duplex unwinding BP
GO:0032991 protein-containing complex CC
GO:0034097 response to cytokine BP
GO:0034458 3'-5' RNA helicase activity MF
GO:0034612 response to tumor necrosis factor BP
GO:0034641 cellular nitrogen compound metabolic process BP
GO:0035770 ribonucleoprotein granule CC
GO:0035821 modulation of process of another organism BP
GO:0042221 response to chemical BP
GO:0042623 ATP hydrolysis activity MF
GO:0043170 macromolecule metabolic process BP
GO:0043226 organelle CC
GO:0043227 membrane-bounded organelle CC
GO:0043228 non-membrane-bounded organelle CC
GO:0043229 intracellular organelle CC
GO:0043231 intracellular membrane-bounded organelle CC
GO:0043232 intracellular non-membrane-bounded organelle CC
GO:0043900 obsolete regulation of multi-organism process BP
GO:0043902 obsolete positive regulation of multi-organism process BP
GO:0043903 regulation of biological process involved in symbiotic interaction BP
GO:0044237 cellular metabolic process BP
GO:0044238 primary metabolic process BP
GO:0044260 cellular macromolecule metabolic process BP
GO:0044403 biological process involved in symbiotic interaction BP
GO:0044419 biological process involved in interspecies interaction between organisms BP
GO:0044424 obsolete intracellular part CC
GO:0044444 obsolete cytoplasmic part CC
GO:0044464 obsolete cell part CC
GO:0044703 multi-organism reproductive process BP
GO:0044788 modulation by host of viral process BP
GO:0044794 positive regulation by host of viral process BP
GO:0044827 modulation by host of viral genome replication BP
GO:0044829 positive regulation by host of viral genome replication BP
GO:0045069 regulation of viral genome replication BP
GO:0045070 positive regulation of viral genome replication BP
GO:0045786 negative regulation of cell cycle BP
GO:0045787 positive regulation of cell cycle BP
GO:0045930 negative regulation of mitotic cell cycle BP
GO:0046483 heterocycle metabolic process BP
GO:0048232 male gamete generation BP
GO:0048468 cell development BP
GO:0048477 oogenesis BP
GO:0048515 spermatid differentiation BP
GO:0048518 positive regulation of biological process BP
GO:0048519 negative regulation of biological process BP
GO:0048522 positive regulation of cellular process BP
GO:0048523 negative regulation of cellular process BP
GO:0048524 positive regulation of viral process BP
GO:0048599 oocyte development BP
GO:0048609 multicellular organismal reproductive process BP
GO:0048856 anatomical structure development BP
GO:0048869 cellular developmental process BP
GO:0050789 regulation of biological process BP
GO:0050792 regulation of viral process BP
GO:0050794 regulation of cellular process BP
GO:0050896 response to stimulus BP
GO:0051276 chromosome organization BP
GO:0051445 regulation of meiotic cell cycle BP
GO:0051446 positive regulation of meiotic cell cycle BP
GO:0051702 biological process involved in interaction with symbiont BP
GO:0051704 obsolete multi-organism process BP
GO:0051726 regulation of cell cycle BP
GO:0051728 cell cycle switching, mitotic to meiotic cell cycle BP
GO:0051729 germline cell cycle switching, mitotic to meiotic cell cycle BP
GO:0051817 obsolete modulation of process of other organism involved in symbiotic interaction BP
GO:0051851 modulation by host of symbiont process BP
GO:0060184 cell cycle switching BP
GO:0065007 biological regulation BP
GO:0070035 obsolete purine NTP-dependent helicase activity MF
GO:0070063 RNA polymerase binding MF
GO:0070555 response to interleukin-1 BP
GO:0071103 DNA conformation change BP
GO:0071704 organic substance metabolic process BP
GO:0071840 cellular component organization or biogenesis BP
GO:0090304 nucleic acid metabolic process BP
GO:0097159 organic cyclic compound binding MF
GO:0140097 catalytic activity, acting on DNA MF
GO:0140098 catalytic activity, acting on RNA MF
GO:1901360 organic cyclic compound metabolic process BP
GO:1901363 heterocyclic compound binding MF
GO:1903900 regulation of viral life cycle BP
GO:1903902 positive regulation of viral life cycle BP
GO:1990247 N6-methyladenosine-containing RNA binding MF
GO:1990904 ribonucleoprotein complex CC
GO:2000241 regulation of reproductive process BP
GO:2000243 positive regulation of reproductive process BP
KEGG Term Name Description
map03018 RNA degradation The correct processing, quality control and turnover of cellular RNA molecules are critical to many aspects in the expression of genetic information. In eukaryotes, two major pathways of mRNA decay exist and both pathways are initiated by poly(A) shortening of the mRNA. In the 5' to 3' pathway, this is followed by decapping which then permits the 5' to 3' exonucleolytic degradation of transcripts. In the 3' to 5' pathway, the exosome, a large multisubunit complex, plays a key role. The exosome exists in archaeal cells, too. In bacteria, endoribonuclease E, a key enzyme involved in RNA decay and processing, organizes a protein complex called degradosome. RNase E or R interacts with the phosphate-dependent exoribonuclease polynucleotide phosphorylase, DEAD-box helicases, and additional factors in the RNA-degrading complex.