PPGR - Gene Detail

Basic Information

Gene ID	Atru.chr6.2050.g View in Genome Browser
Position	chr6:31525434-31534328 (-) 8894bp
Gene Type	gene
Gene Description (Protein Product)	Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
Organism	Acer truncatum
Also AS	AT1G06560

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

Atru.chr6.3359.g heat shock protein

Atru.chr8.2209.g Methylates the 2'-O-ribose of nucleotides at positions 32 and 34 of the tRNA anticodon loop of substrate tRNAs

Atru.chr9.676.g H ACA ribonucleoprotein complex subunit 2-like

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Pathway

GO Term	Description	GO Category
GO:0000049	tRNA binding	MF
GO:0001510	RNA methylation	BP
GO:0003674	molecular_function	MF
GO:0003676	nucleic acid binding	MF
GO:0003723	RNA binding	MF
GO:0003824	catalytic activity	MF
GO:0005488	binding	MF
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0006139	nucleobase-containing compound metabolic process	BP
GO:0006396	RNA processing	BP
GO:0006399	tRNA metabolic process	BP
GO:0006400	tRNA modification	BP
GO:0006725	cellular aromatic compound metabolic process	BP
GO:0006807	nitrogen compound metabolic process	BP
GO:0008033	tRNA processing	BP
GO:0008150	biological_process	BP
GO:0008152	metabolic process	BP
GO:0008168	methyltransferase activity	MF
GO:0008173	RNA methyltransferase activity	MF
GO:0008175	tRNA methyltransferase activity	MF
GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	MF
GO:0009451	RNA modification	BP
GO:0009987	cellular process	BP
GO:0010467	gene expression	BP
GO:0016070	RNA metabolic process	BP
GO:0016427	tRNA (cytosine) methyltransferase activity	MF
GO:0016428	tRNA (cytosine-5-)-methyltransferase activity	MF
GO:0016740	transferase activity	MF
GO:0016741	transferase activity, transferring one-carbon groups	MF
GO:0030488	tRNA methylation	BP
GO:0032259	methylation	BP
GO:0034470	ncRNA processing	BP
GO:0034641	cellular nitrogen compound metabolic process	BP
GO:0034660	ncRNA metabolic process	BP
GO:0043170	macromolecule metabolic process	BP
GO:0043412	macromolecule modification	BP
GO:0043414	macromolecule methylation	BP
GO:0044237	cellular metabolic process	BP
GO:0044238	primary metabolic process	BP
GO:0044260	cellular macromolecule metabolic process	BP
GO:0044424	obsolete intracellular part	CC
GO:0044464	obsolete cell part	CC
GO:0046483	heterocycle metabolic process	BP
GO:0071704	organic substance metabolic process	BP
GO:0090304	nucleic acid metabolic process	BP
GO:0097159	organic cyclic compound binding	MF
GO:0140098	catalytic activity, acting on RNA	MF
GO:0140101	catalytic activity, acting on a tRNA	MF
GO:1901360	organic cyclic compound metabolic process	BP
GO:1901363	heterocyclic compound binding	MF