PPGR - Gene Detail

Basic Information

Gene ID	gene-CEY00_Acc11440 View in Genome Browser
Position	CM009663.1:11335975-11341996 (-) 6021bp
Gene Type	gene
Gene Description (Protein Product)	"Non-catalytic subunit of the queuine tRNA- ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp
Organism	Actinidia chinensis
Also AS	CEY00_Acc11440

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-CEY00_Acc23922 Catalytic subunit of the queuine tRNA-ribosyltransferase (TGT) that catalyzes the base-exchange of a guanine (G) residue with queuine (Q) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis- dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming queuine, allowing a nucleophilic attack on the C1' of the ribose to form the product

gene-CEY00_Acc21215 tRNA (Guanine(10)-N2)-methyltransferase homolog

gene-CEY00_Acc23992 tRNA pseudouridine synthase

Regulatory gene

gene-CEY00_Acc00171 ethylene-responsive transcription factor

gene-CEY00_Acc00314 Transcription factor

gene-CEY00_Acc00436 homeobox-leucine zipper protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

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