PPGR - Gene Detail

Basic Information

Gene ID	gene-CEY00_Acc17871 View in Genome Browser
Position	CM009669.1:3230508-3235352 (+) 4844bp
Gene Type	gene
Gene Description (Protein Product)	Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)
Organism	Actinidia chinensis
Also AS	AT1G48900CEY00_Acc17871

upstream:

Domain

Database	EntryID	E-Value	Start	end	InterPro ID	Description

Regulation&Interaction

Protein-protein interaction (PPI)

gene-CEY00_Acc24501 Signal recognition particle 19 kDa

gene-CEY00_Acc27077 Signal recognition particle 19 kDa

gene-CEY00_Acc25597 Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP9 together with SRP14 and the Alu portion of the SRP RNA, constitutes the elongation arrest domain of SRP. The complex of SRP9 and SRP14 is required for SRP RNA binding

Regulatory gene

gene-CEY00_Acc00027 Floral homeotic protein

gene-CEY00_Acc00495 MADS-box transcription factor

gene-CEY00_Acc01045 Floral homeotic protein

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Annotation

Orthologous Group

Orthologous ID	Species Number	All hits in PereRegDB	Hits of this species	Orthologous Detail

Expression Profile

DataSet	Number of Samples expressed(TPM>1)	Mean	Min	Max	Standard deviation(SD)	Coeffcient variation(CV)

Select Expression

Pathway

GO Term	Description	GO Category
GO:0005575	cellular_component	CC
GO:0005622	intracellular anatomical structure	CC
GO:0005623	obsolete cell	CC
GO:0005737	cytoplasm	CC
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	CC
GO:0005829	cytosol	CC
GO:0032991	protein-containing complex	CC
GO:0044424	obsolete intracellular part	CC
GO:0044444	obsolete cytoplasmic part	CC
GO:0044464	obsolete cell part	CC
GO:0048500	signal recognition particle	CC
GO:1990904	ribonucleoprotein complex	CC

KEGG Term	Name	Description
map03060	Protein export	The protein export is the active transport of proteins from the cytoplasm to the exterior of the cell, or to the periplasmic compartment in Gram-negative bacteria. The sec dependent pathway is the general protein export system that transports newly synthesized proteins into or across the cell membrane. The translocation channel is formed from a conserved trimeric membrane protein complex, called the Sec61/SecY complex. The twin-arginine translocation (Tat) pathway is another protein transport system that transports folded proteins in bacteria, archaea, and chloroplasts. Many Tat systems comprise three functionally different membrane proteins, TatA, TatB, and TatC, but TatA and TatE seem to have overlapping functions, with TatA having by far the more important role.